Literature DB >> 16981672

The structural biology of protein aggregation diseases: Fundamental questions and some answers.

David Eisenberg1, Rebecca Nelson, Michael R Sawaya, Melinda Balbirnie, Shilpa Sambashivan, Magdalena I Ivanova, Anders Ø Madsen, Christian Riekel.   

Abstract

Amyloid fibrils are found in association with at least two dozen fatal diseases. The tendency of numerous proteins to convert into amyloid-like fibrils poses fundamental questions for structural biology and for protein science in general. Among these are the following: What is the structure of the cross-beta spine, common to amyloid-like fibrils? Is there a sequence signature for proteins that form amyloid-like fibrils? What is the nature of the structural conversion from native to amyloid states, and do fibril-forming proteins have two distinct stable states, the native state and the amyloid state? What is the basis of protein complementarity, in which a protein chain can bind to itself? We offer tentative answers here, based on our own recent structural studies.

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Year:  2006        PMID: 16981672      PMCID: PMC3017558          DOI: 10.1021/ar0500618

Source DB:  PubMed          Journal:  Acc Chem Res        ISSN: 0001-4842            Impact factor:   22.384


  64 in total

1.  Myoglobin forms amyloid fibrils by association of unfolded polypeptide segments.

Authors:  Marcus Fändrich; Vincent Forge; Katrin Buder; Marlis Kittler; Christopher M Dobson; Stephan Diekmann
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-09       Impact factor: 11.205

2.  High-resolution molecular structure of a peptide in an amyloid fibril determined by magic angle spinning NMR spectroscopy.

Authors:  Christopher P Jaroniec; Cait E MacPhee; Vikram S Bajaj; Michael T McMahon; Christopher M Dobson; Robert G Griffin
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-08       Impact factor: 11.205

3.  Conformational variations in an infectious protein determine prion strain differences.

Authors:  Motomasa Tanaka; Peter Chien; Nariman Naber; Roger Cooke; Jonathan S Weissman
Journal:  Nature       Date:  2004-03-18       Impact factor: 49.962

4.  beta-Helix is a likely core structure of yeast prion Sup35 amyloid fibers.

Authors:  Aiko Kishimoto; Kazuya Hasegawa; Hirofumi Suzuki; Hideki Taguchi; Keiichi Namba; Masasuke Yoshida
Journal:  Biochem Biophys Res Commun       Date:  2004-03-12       Impact factor: 3.575

Review 5.  Structures for amyloid fibrils.

Authors:  O Sumner Makin; Louise C Serpell
Journal:  FEBS J       Date:  2005-12       Impact factor: 5.542

Review 6.  Structural models of amyloid-like fibrils.

Authors:  Rebecca Nelson; David Eisenberg
Journal:  Adv Protein Chem       Date:  2006

7.  Common core structure of amyloid fibrils by synchrotron X-ray diffraction.

Authors:  M Sunde; L C Serpell; M Bartlam; P E Fraser; M B Pepys; C C Blake
Journal:  J Mol Biol       Date:  1997-10-31       Impact factor: 5.469

8.  X-ray diffraction studies on amyloid filaments.

Authors:  E D Eanes; G G Glenner
Journal:  J Histochem Cytochem       Date:  1968-11       Impact factor: 2.479

9.  The native-like conformation of Ure2p in fibrils assembled under physiologically relevant conditions switches to an amyloid-like conformation upon heat-treatment of the fibrils.

Authors:  Luc Bousset; Fatma Briki; Jean Doucet; Ronald Melki
Journal:  J Struct Biol       Date:  2003-02       Impact factor: 2.867

10.  Protein-only transmission of three yeast prion strains.

Authors:  Chih-Yen King; Ruben Diaz-Avalos
Journal:  Nature       Date:  2004-03-18       Impact factor: 49.962

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  50 in total

1.  The impact of solubility and electrostatics on fibril formation by the H3 and H4 histones.

Authors:  Traci B Topping; Lisa M Gloss
Journal:  Protein Sci       Date:  2011-11-09       Impact factor: 6.725

2.  Dissecting structure of prion amyloid fibrils by hydrogen-deuterium exchange ultraviolet Raman spectroscopy.

Authors:  Victor Shashilov; Ming Xu; Natallia Makarava; Regina Savtchenko; Ilia V Baskakov; Igor K Lednev
Journal:  J Phys Chem B       Date:  2012-06-26       Impact factor: 2.991

3.  Vibrational entropy and the structural organization of proteins.

Authors:  L Bongini; F Piazza; L Casetti; P De Los Rios
Journal:  Eur Phys J E Soft Matter       Date:  2010-09-18       Impact factor: 1.890

4.  The structural intolerance of the PrP alpha-fold for polar substitution of the helix-3 methionines.

Authors:  Silvia Lisa; Massimiliano Meli; Gema Cabello; Ruth Gabizon; Giorgio Colombo; María Gasset
Journal:  Cell Mol Life Sci       Date:  2010-05-09       Impact factor: 9.261

Review 5.  [Cutaneous amyloidosis].

Authors:  S Schreml; R-M Szeimies; M Landthaler; P Babilas
Journal:  Hautarzt       Date:  2011-01       Impact factor: 0.751

Review 6.  Disorder-to-order conformational transitions in protein structure and its relationship to disease.

Authors:  Paola Mendoza-Espinosa; Victor García-González; Abel Moreno; Rolando Castillo; Jaime Mas-Oliva
Journal:  Mol Cell Biochem       Date:  2009-04-09       Impact factor: 3.396

Review 7.  Structure-function relationships of pre-fibrillar protein assemblies in Alzheimer's disease and related disorders.

Authors:  F Rahimi; A Shanmugam; G Bitan
Journal:  Curr Alzheimer Res       Date:  2008-06       Impact factor: 3.498

Review 8.  A structural overview of the vertebrate prion proteins.

Authors:  Annalisa Pastore; Adriana Zagari
Journal:  Prion       Date:  2007-07-08       Impact factor: 3.931

9.  Aggregates of α-chymotrypsinogen anneal to access more stable states.

Authors:  Ronald W Maurer; Alan K Hunter; Anne S Robinson; Christopher J Roberts
Journal:  Biotechnol Bioeng       Date:  2013-11-18       Impact factor: 4.530

10.  Influence of the valine zipper region on the structure and aggregation of the basic leucine zipper (bZIP) domain of activating transcription factor 5 (ATF5).

Authors:  Natalie A Ciaccio; T Steele Reynolds; C Russell Middaugh; Jennifer S Laurence
Journal:  Mol Pharm       Date:  2012-10-23       Impact factor: 4.939

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