Literature DB >> 19480022

Developmental validation of short tandem repeat reagent kit for forensic DNA profiling of canine biological material.

Melody Dayton1, Mikko T Koskinen, Bradley K Tom, Anna-Maria Mattila, Eric Johnston, Joy Halverson, Dennis Fantin, Sue DeNise, Bruce Budowle, David Glenn Smith, Sree Kanthaswamy.   

Abstract

AIM: To develop a reagent kit that enables multiplex polymerase chain reaction (PCR) amplification of 18 short tandem repeats (STR) and the canine sex-determining Zinc Finger marker.
METHODS: Validation studies to determine the robustness and reliability in forensic DNA typing of this multiplex assay included sensitivity testing, reproducibility studies, intra- and inter-locus color balance studies, annealing temperature and cycle number studies, peak height ratio determination, characterization of artifacts such as stutter percentages and dye blobs, mixture analyses, species-specificity, case type samples analyses and population studies.
RESULTS: The kit robustly amplified domesticated dog samples and consistently generated full 19-locus profiles from as little as 125 pg of dog DNA. In addition, wolf DNA samples could be analyzed with the kit.
CONCLUSION: The kit, which produces robust, reliable, and reproducible results, will be made available for the forensic research community after modifications based on this study's evaluation to comply with the quality standards expected for forensic casework.

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Year:  2009        PMID: 19480022      PMCID: PMC2702741          DOI: 10.3325/cmj.2009.50.268

Source DB:  PubMed          Journal:  Croat Med J        ISSN: 0353-9504            Impact factor:   1.351


  24 in total

1.  A convenient and efficient microsatellite-based assay for resolving parentages in dogs.

Authors:  M T Koskinen; P Bredbacka
Journal:  Anim Genet       Date:  1999-04       Impact factor: 3.169

2.  Developmental validation of a single-tube amplification of the 13 CODIS STR loci, D2S1338, D19S433, and amelogenin: the AmpFlSTR Identifiler PCR Amplification Kit.

Authors:  Patrick J Collins; Lori K Hennessy; Craig S Leibelt; Rhonda K Roby; Dennis J Reeder; Paul A Foxall
Journal:  J Forensic Sci       Date:  2004-11       Impact factor: 1.832

3.  A class of highly polymorphic tetranucleotide repeats for canine genetic mapping.

Authors:  L V Francisco; A A Langston; C S Mellersh; C L Neal; E A Ostrander
Journal:  Mamm Genome       Date:  1996-05       Impact factor: 2.957

4.  A linkage map of the canine genome.

Authors:  C S Mellersh; A A Langston; G M Acland; M A Fleming; K Ray; N A Wiegand; L V Francisco; M Gibbs; G D Aguirre; E A Ostrander
Journal:  Genomics       Date:  1997-12-15       Impact factor: 5.736

5.  Improved single-strand DNA sizing accuracy in capillary electrophoresis.

Authors:  B B Rosenblum; F Oaks; S Menchen; B Johnson
Journal:  Nucleic Acids Res       Date:  1997-10-01       Impact factor: 16.971

6.  Binding proteins selected from combinatorial libraries of an alpha-helical bacterial receptor domain.

Authors:  K Nord; E Gunneriusson; J Ringdahl; S Ståhl; M Uhlén; P A Nygren
Journal:  Nat Biotechnol       Date:  1997-08       Impact factor: 54.908

7.  Development of a nomenclature system for a canine STR multiplex reagent kit.

Authors:  Bradley K Tom; Mikko T Koskinen; Melody Dayton; Anna-Maria Mattila; Eric Johnston; Dennis Fantin; Sue Denise; Theresa Spear; David Glenn Smith; Jessica Satkoski; Bruce Budowle; Sree Kanthaswamy
Journal:  J Forensic Sci       Date:  2010-03-25       Impact factor: 1.832

8.  Removal of a PCR inhibitor and resolution of DNA STR types in mixed human-canine stains from a five year old case.

Authors:  G G Shutler; P Gagnon; G Verret; H Kalyn; S Korkosh; E Johnston; J Halverson
Journal:  J Forensic Sci       Date:  1999-05       Impact factor: 1.832

9.  Canine-specific STR typing of saliva traces on dog bite wounds.

Authors:  Cordula Eichmann; Burkhard Berger; Maximilian Reinhold; Martin Lutz; Walther Parson
Journal:  Int J Legal Med       Date:  2004-10-12       Impact factor: 2.686

10.  A second-generation genetic linkage map of the domestic dog, Canis familiaris.

Authors:  M W Neff; K W Broman; C S Mellersh; K Ray; G M Acland; G D Aguirre; J S Ziegle; E A Ostrander; J Rine
Journal:  Genetics       Date:  1999-02       Impact factor: 4.562

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  5 in total

1.  Polymorphism analyses of 19 STRs in Labrador Retriever population from China and its heterozygosity comparisons with other retriever breeds.

Authors:  Meng-Lei Wang; Xiao-Ye Jin; Xin Xiong; Jin-Long Yang; Jian-Ping Li; Qi Wang; Bo-Feng Zhu; Ya-Jun Deng
Journal:  Mol Biol Rep       Date:  2019-01-28       Impact factor: 2.316

2.  An assessment of scientific and technical aspects of closed investigations of canine forensics DNA--case series from the University of California, Davis, USA.

Authors:  Günther Scharnhorst; Sree Kanthaswamy
Journal:  Croat Med J       Date:  2011-06       Impact factor: 1.351

3.  The use of genetic markers to estimate relationships between dogs in the course of criminal investigations.

Authors:  Roberta Ciampolini; Francesca Cecchi; Isabella Spinetti; Anna Rocchi; Filippo Biscarini
Journal:  BMC Res Notes       Date:  2017-08-17

Review 4.  Forensic genetics and genomics: Much more than just a human affair.

Authors:  Miguel Arenas; Filipe Pereira; Manuela Oliveira; Nadia Pinto; Alexandra M Lopes; Veronica Gomes; Angel Carracedo; Antonio Amorim
Journal:  PLoS Genet       Date:  2017-09-21       Impact factor: 5.917

5.  Population genetic study of 10 short tandem repeat loci from 600 domestic dogs in Korea.

Authors:  Seo Hyun Moon; Yoon-Jeong Jang; Myun Soo Han; Myung-Haing Cho
Journal:  J Vet Sci       Date:  2016-09-30       Impact factor: 1.672

  5 in total

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