Literature DB >> 15062076

Rational protein crystallization by mutational surface engineering.

Zygmunt S Derewenda1.   

Abstract

Protein crystallization constitutes a limiting step in structure determination by X-ray diffraction. Even if single crystals are available, inadequate physical quality may seriously limit the resolution of the available data and consequently the accuracy of the atomic model. Recent studies show that targeted mutagenesis of surface patches containing residues with large flexible side chains and their replacement with smaller amino acids lead to effective preparation of X-ray quality crystals of proteins otherwise recalcitrant to crystallization. Furthermore, this technique can also be used to obtain crystals of superior quality as compared to those grown for the wild-type protein, sometimes increasing the effective resolution by as much as 1 A or more. Several recent examples of this new methodology suggest that the method has the potential to become a routine tool in protein crystallography.

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Year:  2004        PMID: 15062076     DOI: 10.1016/j.str.2004.03.008

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  121 in total

1.  Structural basis for basal activity and autoactivation of abscisic acid (ABA) signaling SnRK2 kinases.

Authors:  Ley-Moy Ng; Fen-Fen Soon; X Edward Zhou; Graham M West; Amanda Kovach; Kelly M Suino-Powell; Michael J Chalmers; Jun Li; Eu-Leong Yong; Jian-Kang Zhu; Patrick R Griffin; Karsten Melcher; H Eric Xu
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-12       Impact factor: 11.205

2.  Harvesting the high-hanging fruit: the structure of the YdeN gene product from Bacillus subtilis at 1.8 angstroms resolution.

Authors:  Izabela Janda; Yancho Devedjiev; David Cooper; Maksymilian Chruszcz; Urszula Derewenda; Aleksandra Gabrys; Wladek Minor; Andrzej Joachimiak; Zygmunt S Derewenda
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-05-21

3.  Circular permutation as a tool to reduce surface entropy triggers crystallization of the signal recognition particle receptor beta subunit.

Authors:  Thomas U Schwartz; Rudolf Walczak; Günter Blobel
Journal:  Protein Sci       Date:  2004-08-31       Impact factor: 6.725

4.  The crystal structure of the reduced, Zn2+-bound form of the B. subtilis Hsp33 chaperone and its implications for the activation mechanism.

Authors:  Izabela Janda; Yancho Devedjiev; Urszula Derewenda; Zbigniew Dauter; Jakub Bielnicki; David R Cooper; Paul C F Graf; Andrzej Joachimiak; Ursula Jakob; Zygmunt S Derewenda
Journal:  Structure       Date:  2004-10       Impact factor: 5.006

5.  Computational design of a protein crystal.

Authors:  Christopher J Lanci; Christopher M MacDermaid; Seung-gu Kang; Rudresh Acharya; Benjamin North; Xi Yang; X Jade Qiu; William F DeGrado; Jeffery G Saven
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-25       Impact factor: 11.205

6.  Application of protein engineering to enhance crystallizability and improve crystal properties.

Authors:  Zygmunt S Derewenda
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-04-21

7.  Crystallization and preliminary crystallographic analysis of a calcineurin B-like protein 1 (CBL1) mutant from Ammopiptanthus mongolicus.

Authors:  Guijun Shang; Huaixing Cang; Zhijie Liu; Wei Gao; Ruchang Bi
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-11-25

8.  Conversion of scFv peptide-binding specificity for crystal chaperone development.

Authors:  Jennifer C Pai; Jeffrey A Culver; Jason E Drury; Rakesh S Motani; Raquel L Lieberman; Jennifer A Maynard
Journal:  Protein Eng Des Sel       Date:  2011-01-08       Impact factor: 1.650

9.  Understanding the physical properties that control protein crystallization by analysis of large-scale experimental data.

Authors:  W Nicholson Price; Yang Chen; Samuel K Handelman; Helen Neely; Philip Manor; Richard Karlin; Rajesh Nair; Jinfeng Liu; Michael Baran; John Everett; Saichiu N Tong; Farhad Forouhar; Swarup S Swaminathan; Thomas Acton; Rong Xiao; Joseph R Luft; Angela Lauricella; George T DeTitta; Burkhard Rost; Gaetano T Montelione; John F Hunt
Journal:  Nat Biotechnol       Date:  2009-01       Impact factor: 54.908

10.  Identification of P218 as a potent inhibitor of Mycobacterium ulcerans DHFR.

Authors:  Gustavo P Riboldi; Rachael Zigweid; Peter J Myler; Stephen J Mayclin; Rafael M Couñago; Bart L Staker
Journal:  RSC Med Chem       Date:  2020-10-22
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