Literature DB >> 19477152

Functional and evolutionary insights into human brain development through global transcriptome analysis.

Matthew B Johnson1, Yuka Imamura Kawasawa, Christopher E Mason, Zeljka Krsnik, Giovanni Coppola, Darko Bogdanović, Daniel H Geschwind, Shrikant M Mane, Matthew W State, Nenad Sestan.   

Abstract

Our understanding of the evolution, formation, and pathological disruption of human brain circuits is impeded by a lack of comprehensive data on the developing brain transcriptome. A whole-genome, exon-level expression analysis of 13 regions from left and right sides of the mid-fetal human brain revealed that 76% of genes are expressed, and 44% of these are differentially regulated. These data reveal a large number of specific gene expression and alternative splicing patterns, as well as coexpression networks, associated with distinct regions and neurodevelopmental processes. Of particular relevance to cognitive specializations, we have characterized the transcriptional landscapes of prefrontal cortex and perisylvian speech and language areas, which exhibit a population-level global expression symmetry. We show that differentially expressed genes are more frequently associated with human-specific evolution of putative cis-regulatory elements. These data provide a wealth of biological insights into the complex transcriptional and molecular underpinnings of human brain development and evolution.

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Year:  2009        PMID: 19477152      PMCID: PMC2739738          DOI: 10.1016/j.neuron.2009.03.027

Source DB:  PubMed          Journal:  Neuron        ISSN: 0896-6273            Impact factor:   17.173


  73 in total

1.  Zfp312 is required for subcortical axonal projections and dendritic morphology of deep-layer pyramidal neurons of the cerebral cortex.

Authors:  Jie-Guang Chen; Mladen-Roko Rasin; Kenneth Y Kwan; Nenad Sestan
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-28       Impact factor: 11.205

Review 2.  Neuronal subtype specification in the cerebral cortex.

Authors:  Bradley J Molyneaux; Paola Arlotta; Joao R L Menezes; Jeffrey D Macklis
Journal:  Nat Rev Neurosci       Date:  2007-06       Impact factor: 34.870

3.  Novel genes differentially expressed in cortical regions during late neurogenesis.

Authors:  Sven Mühlfriedel; Friederike Kirsch; Peter Gruss; Kamal Chowdhury; Anastassia Stoykova
Journal:  Eur J Neurosci       Date:  2007-07       Impact factor: 3.386

4.  Satb2 is a postmitotic determinant for upper-layer neuron specification in the neocortex.

Authors:  Olga Britanova; Camino de Juan Romero; Amanda Cheung; Kenneth Y Kwan; Manuela Schwark; Andrea Gyorgy; Tanja Vogel; Sergey Akopov; Miso Mitkovski; Denes Agoston; Nenad Sestan; Zoltán Molnár; Victor Tarabykin
Journal:  Neuron       Date:  2008-02-07       Impact factor: 17.173

Review 5.  Splicing regulation in neurologic disease.

Authors:  Donny D Licatalosi; Robert B Darnell
Journal:  Neuron       Date:  2006-10-05       Impact factor: 17.173

6.  Thrombospondins are astrocyte-secreted proteins that promote CNS synaptogenesis.

Authors:  Karen S Christopherson; Erik M Ullian; Caleb C A Stokes; Christine E Mullowney; Johannes W Hell; Azin Agah; Jack Lawler; Deane F Mosher; Paul Bornstein; Ben A Barres
Journal:  Cell       Date:  2005-02-11       Impact factor: 41.582

Review 7.  A natural history of the human mind: tracing evolutionary changes in brain and cognition.

Authors:  Chet C Sherwood; Francys Subiaul; Tadeusz W Zawidzki
Journal:  J Anat       Date:  2008-04       Impact factor: 2.610

Review 8.  Genetic basis of human brain evolution.

Authors:  Eric J Vallender; Nitzan Mekel-Bobrov; Bruce T Lahn
Journal:  Trends Neurosci       Date:  2008-10-08       Impact factor: 13.837

Review 9.  Evolution at two levels: on genes and form.

Authors:  Sean B Carroll
Journal:  PLoS Biol       Date:  2005-07-12       Impact factor: 8.029

10.  Early asymmetry of gene transcription in embryonic human left and right cerebral cortex.

Authors:  Tao Sun; Christina Patoine; Amir Abu-Khalil; Jane Visvader; Eleanor Sum; Timothy J Cherry; Stuart H Orkin; Daniel H Geschwind; Christopher A Walsh
Journal:  Science       Date:  2005-05-12       Impact factor: 47.728

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  281 in total

1.  Genome-wide transcriptome profiling reveals the functional impact of rare de novo and recurrent CNVs in autism spectrum disorders.

Authors:  Rui Luo; Stephan J Sanders; Yuan Tian; Irina Voineagu; Ni Huang; Su H Chu; Lambertus Klei; Chaochao Cai; Jing Ou; Jennifer K Lowe; Matthew E Hurles; Bernie Devlin; Matthew W State; Daniel H Geschwind
Journal:  Am J Hum Genet       Date:  2012-06-21       Impact factor: 11.025

Review 2.  Novel approaches to studying the genetic basis of cerebellar development.

Authors:  Samin A Sajan; Kathryn E Waimey; Kathleen J Millen
Journal:  Cerebellum       Date:  2010-09       Impact factor: 3.847

Review 3.  Understanding neuronal connectivity through the post-transcriptional toolkit.

Authors:  Carlos M Loya; David Van Vactor; Tudor A Fulga
Journal:  Genes Dev       Date:  2010-04-01       Impact factor: 11.361

Review 4.  Human brain evolution: from gene discovery to phenotype discovery.

Authors:  Todd M Preuss
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-20       Impact factor: 11.205

5.  DNA methylation signatures in development and aging of the human prefrontal cortex.

Authors:  Shusuke Numata; Tianzhang Ye; Thomas M Hyde; Xavier Guitart-Navarro; Ran Tao; Michael Wininger; Carlo Colantuoni; Daniel R Weinberger; Joel E Kleinman; Barbara K Lipska
Journal:  Am J Hum Genet       Date:  2012-02-02       Impact factor: 11.025

6.  Structural Development of Human Fetal and Preterm Brain Cortical Plate Based on Population-Averaged Templates.

Authors:  Qiaowen Yu; Austin Ouyang; Lina Chalak; Tina Jeon; Jonathan Chia; Virendra Mishra; Muraleedharan Sivarajan; Greg Jackson; Nancy Rollins; Shuwei Liu; Hao Huang
Journal:  Cereb Cortex       Date:  2016-10-17       Impact factor: 5.357

7.  Alterations in Anatomical Covariance in the Prematurely Born.

Authors:  Dustin Scheinost; Soo Hyun Kwon; Cheryl Lacadie; Betty R Vohr; Karen C Schneider; Xenophon Papademetris; R Todd Constable; Laura R Ment
Journal:  Cereb Cortex       Date:  2017-01-01       Impact factor: 5.357

8.  Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex.

Authors:  Tomasz J Nowakowski; Aparna Bhaduri; Alex A Pollen; Beatriz Alvarado; Mohammed A Mostajo-Radji; Elizabeth Di Lullo; Maximilian Haeussler; Carmen Sandoval-Espinosa; Siyuan John Liu; Dmitry Velmeshev; Johain Ryad Ounadjela; Joe Shuga; Xiaohui Wang; Daniel A Lim; Jay A West; Anne A Leyrat; W James Kent; Arnold R Kriegstein
Journal:  Science       Date:  2017-12-08       Impact factor: 47.728

Review 9.  Enhancing our brains: Genomic mechanisms underlying cortical evolution.

Authors:  Caitlyn Mitchell; Debra L Silver
Journal:  Semin Cell Dev Biol       Date:  2017-08-31       Impact factor: 7.727

Review 10.  TDP43 and RNA instability in amyotrophic lateral sclerosis.

Authors:  Kaitlin Weskamp; Sami J Barmada
Journal:  Brain Res       Date:  2018-01-31       Impact factor: 3.252

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