Literature DB >> 19466413

Limit theorems for patterns in phylogenetic trees.

Huilan Chang1, Michael Fuchs.   

Abstract

Studying the shape of phylogenetic trees under different random models is an important issue in evolutionary biology. In this paper, we propose a general framework for deriving detailed statistical results for patterns in phylogenetic trees under the Yule-Harding model and the uniform model, two of the most fundamental random models considered in phylogenetics. Our framework will unify several recent studies which were mainly concerned with the mean value and the variance. Moreover, refined statistical results such as central limit theorems, Berry-Esseen bounds, local limit theorems, etc., are obtainable with our approach as well. A key contribution of the current study is that our results are applicable to the whole range of possible sizes of the pattern.

Mesh:

Year:  2009        PMID: 19466413     DOI: 10.1007/s00285-009-0275-6

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  4 in total

1.  Properties of phylogenetic trees generated by Yule-type speciation models.

Authors:  M Steel; A McKenzie
Journal:  Math Biosci       Date:  2001-03       Impact factor: 2.144

2.  Distributions of cherries for two models of trees.

Authors:  A McKenzie; M Steel
Journal:  Math Biosci       Date:  2000-03       Impact factor: 2.144

Review 3.  Using tree shape.

Authors:  Arne Ø Mooers; Stephen B Heard
Journal:  Syst Biol       Date:  2002-12       Impact factor: 15.683

4.  apTreeshape: statistical analysis of phylogenetic tree shape.

Authors:  Nicolas Bortolussi; Eric Durand; Michael Blum; Olivier François
Journal:  Bioinformatics       Date:  2005-12-01       Impact factor: 6.937

  4 in total
  5 in total

1.  Stochastic analysis of the extra clustering model for animal grouping.

Authors:  Michael Drmota; Michael Fuchs; Yi-Wen Lee
Journal:  J Math Biol       Date:  2015-10-31       Impact factor: 2.259

2.  Equality of Shapley value and fair proportion index in phylogenetic trees.

Authors:  Michael Fuchs; Emma Yu Jin
Journal:  J Math Biol       Date:  2014-12-07       Impact factor: 2.259

3.  On asymptotic joint distributions of cherries and pitchforks for random phylogenetic trees.

Authors:  Kwok Pui Choi; Gursharn Kaur; Taoyang Wu
Journal:  J Math Biol       Date:  2021-09-23       Impact factor: 2.259

4.  A simple derivation of the mean of the Sackin index of tree balance under the uniform model on rooted binary labeled trees.

Authors:  Matthew C King; Noah A Rosenberg
Journal:  Math Biosci       Date:  2021-09-16       Impact factor: 2.144

5.  Efficiency of nuclear and mitochondrial markers recovering and supporting known amniote groups.

Authors:  Julia Lambret-Frotté; Fernando Araújo Perini; Claudia Augusta de Moraes Russo
Journal:  Evol Bioinform Online       Date:  2012-08-06       Impact factor: 1.625

  5 in total

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