Literature DB >> 16322049

apTreeshape: statistical analysis of phylogenetic tree shape.

Nicolas Bortolussi1, Eric Durand, Michael Blum, Olivier François.   

Abstract

apTreeshape is a R package dedicated to simulation and analysis of phylogenetic tree topologies using statistical imbalance measures. It is a companion library of the R package 'ape', which provides additional functions for reading, plotting, manipulating phylogenetic trees and for connecting to public phylogenetic tree databases. One strength of the package is to include appropriate corrections of classical shape statistics as well as new tests based on the statistical theory of likelihood ratios.

Mesh：

Year:  2005        PMID： 16322049     DOI： 10.1093/bioinformatics/bti798

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  42 in total

1.  Limit theorems for patterns in phylogenetic trees.

Authors:  Huilan Chang; Michael Fuchs
Journal:  J Math Biol       Date:  2009-05-23       Impact factor: 2.259

2.  Morphological Phylogenetics Evaluated Using Novel Evolutionary Simulations.

Authors:  Joseph N Keating; Robert S Sansom; Mark D Sutton; Christopher G Knight; Russell J Garwood
Journal:  Syst Biol       Date:  2020-09-01       Impact factor: 15.683

3.  The future of evolutionary diversity in reef corals.

Authors:  Danwei Huang; Kaustuv Roy
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-02-19       Impact factor: 6.237

4.  Understanding how biodiversity unfolds through time under neutral theory.

Authors:  Olivier Missa; Calvin Dytham; Hélène Morlon
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2016-04-05       Impact factor: 6.237

5.  A Metric on Phylogenetic Tree Shapes.

Authors:  C Colijn; G Plazzotta
Journal:  Syst Biol       Date:  2018-01-01       Impact factor: 15.683

6.  Ecological and evolutionary determinants for the adaptive radiation of the Madagascan vangas.

Authors:  Knud A Jønsson; Pierre-Henri Fabre; Susanne A Fritz; Rampal S Etienne; Robert E Ricklefs; Tobias B Jørgensen; Jon Fjeldså; Carsten Rahbek; Per G P Ericson; Friederike Woog; Eric Pasquet; Martin Irestedt
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-13       Impact factor: 11.205

7.  The shape of mammalian phylogeny: patterns, processes and scales.

Authors:  Andy Purvis; Susanne A Fritz; Jesús Rodríguez; Paul H Harvey; Richard Grenyer
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-09-12       Impact factor: 6.237

8.  Inferring the dynamics of diversification: a coalescent approach.

Authors:  Hélène Morlon; Matthew D Potts; Joshua B Plotkin
Journal:  PLoS Biol       Date:  2010-09-28       Impact factor: 8.029

9.  Reconstructing the evolutionary history of gypsy retrotransposons in the Périgord black truffle (Tuber melanosporum Vittad.).

Authors:  Thibaut Payen; Claude Murat; Francis Martin
Journal:  Mycorrhiza       Date:  2016-03-30       Impact factor: 3.387

10.  The spatio-temporal colonization and diversification across the Indo-Pacific by a 'great speciator' (Aves, Erythropitta erythrogaster).

Authors:  Martin Irestedt; Pierre-Henri Fabre; Henrique Batalha-Filho; Knud A Jønsson; Cees S Roselaar; George Sangster; Per G P Ericson
Journal:  Proc Biol Sci       Date:  2013-04-03       Impact factor: 5.349
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.