Literature DB >> 19464298

Structure of the human Rev1-DNA-dNTP ternary complex.

Michael K Swan1, Robert E Johnson, Louise Prakash, Satya Prakash, Aneel K Aggarwal.   

Abstract

Y-family DNA polymerases have proven to be remarkably diverse in their functions and in strategies for replicating through DNA lesions. The structure of yeast Rev1 ternary complex has revealed the most radical replication strategy, where the polymerase itself dictates the identity of the incoming nucleotide, as well as the identity of the templating base. We show here that many of the key elements of this highly unusual strategy are conserved between yeast and human Rev1, including the eviction of template G from the DNA helix and the pairing of incoming deoxycytidine 5'-triphosphate with a surrogate arginine residue. We also show that the catalytic core of human Rev1 is uniquely augmented by two large inserts, I1 and I2, wherein I1 extends >20 A away from the active site and may serve as a platform for protein-protein interactions specific for Rev1's role in translesion DNA synthesis in human cells, and I2 acts as a "flap" on the hydrophobic pocket accommodating template G. We suggest that these novel structural features are important for providing human Rev1 greater latitude in promoting efficient and error-free translesion DNA synthesis through the diverse array of bulky and potentially carcinogenic N(2)-deoxyguanosine DNA adducts in human cells.

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Year:  2009        PMID: 19464298      PMCID: PMC2739620          DOI: 10.1016/j.jmb.2009.05.026

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  54 in total

1.  Roles of yeast DNA polymerases delta and zeta and of Rev1 in the bypass of abasic sites.

Authors:  L Haracska; I Unk; R E Johnson; E Johansson; P M Burgers; S Prakash; L Prakash
Journal:  Genes Dev       Date:  2001-04-15       Impact factor: 11.361

2.  Protein-template-directed synthesis across an acrolein-derived DNA adduct by yeast Rev1 DNA polymerase.

Authors:  Deepak T Nair; Robert E Johnson; Louise Prakash; Satya Prakash; Aneel K Aggarwal
Journal:  Structure       Date:  2008-02       Impact factor: 5.006

3.  Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 A resolution.

Authors:  S Doublié; S Tabor; A M Long; C C Richardson; T Ellenberger
Journal:  Nature       Date:  1998-01-15       Impact factor: 49.962

4.  Fidelity of human DNA polymerase eta.

Authors:  R E Johnson; M T Washington; S Prakash; L Prakash
Journal:  J Biol Chem       Date:  2000-03-17       Impact factor: 5.157

5.  Complex formation with Rev1 enhances the proficiency of Saccharomyces cerevisiae DNA polymerase zeta for mismatch extension and for extension opposite from DNA lesions.

Authors:  Narottam Acharya; Robert E Johnson; Satya Prakash; Louise Prakash
Journal:  Mol Cell Biol       Date:  2006-10-09       Impact factor: 4.272

6.  Replication past a trans-4-hydroxynonenal minor-groove adduct by the sequential action of human DNA polymerases iota and kappa.

Authors:  William T Wolfle; Robert E Johnson; Irina G Minko; R Stephen Lloyd; Satya Prakash; Louise Prakash
Journal:  Mol Cell Biol       Date:  2006-01       Impact factor: 4.272

Review 7.  Polycyclic aromatic hydrocarbons in the diet.

Authors:  D H Phillips
Journal:  Mutat Res       Date:  1999-07-15       Impact factor: 2.433

8.  Complex formation of yeast Rev1 and Rev7 proteins: a novel role for the polymerase-associated domain.

Authors:  Narottam Acharya; Lajos Haracska; Robert E Johnson; Ildiko Unk; Satya Prakash; Louise Prakash
Journal:  Mol Cell Biol       Date:  2005-11       Impact factor: 4.272

9.  An incoming nucleotide imposes an anti to syn conformational change on the templating purine in the human DNA polymerase-iota active site.

Authors:  Deepak T Nair; Robert E Johnson; Louise Prakash; Satya Prakash; Aneel K Aggarwal
Journal:  Structure       Date:  2006-04       Impact factor: 5.006

10.  Complex formation of yeast Rev1 with DNA polymerase eta.

Authors:  Narottam Acharya; Lajos Haracska; Satya Prakash; Louise Prakash
Journal:  Mol Cell Biol       Date:  2007-09-17       Impact factor: 4.272

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  44 in total

1.  Identification of an unfolding intermediate for a DNA lesion bypass polymerase.

Authors:  Shanen M Sherrer; Brian A Maxwell; Lindsey R Pack; Kevin A Fiala; Jason D Fowler; Jun Zhang; Zucai Suo
Journal:  Chem Res Toxicol       Date:  2012-06-15       Impact factor: 3.739

2.  Mutagenic Bypass of an Oxidized Abasic Lesion-Induced DNA Interstrand Cross-Link Analogue by Human Translesion Synthesis DNA Polymerases.

Authors:  Wenyan Xu; Adam Ouellette; Souradyuti Ghosh; Tylor C O'Neill; Marc M Greenberg; Linlin Zhao
Journal:  Biochemistry       Date:  2015-12-14       Impact factor: 3.162

3.  Effects of Twelve Germline Missense Variations on DNA Lesion and G-Quadruplex Bypass Activities of Human DNA Polymerase REV1.

Authors:  Mina Yeom; In-Hyeok Kim; Jae-Kwon Kim; KyeongJin Kang; Robert L Eoff; F Peter Guengerich; Jeong-Yun Choi
Journal:  Chem Res Toxicol       Date:  2016-03-04       Impact factor: 3.739

Review 4.  Translesion DNA polymerases in eukaryotes: what makes them tick?

Authors:  Alexandra Vaisman; Roger Woodgate
Journal:  Crit Rev Biochem Mol Biol       Date:  2017-03-09       Impact factor: 8.250

5.  Identification of two functional PCNA-binding domains in human DNA polymerase κ.

Authors:  Jung-Hoon Yoon; Narottam Acharya; Jeseong Park; Debashree Basu; Satya Prakash; Louise Prakash
Journal:  Genes Cells       Date:  2014-05-22       Impact factor: 1.891

6.  Genetic control of predominantly error-free replication through an acrolein-derived minor-groove DNA adduct.

Authors:  Jung-Hoon Yoon; Richard P Hodge; Linda C Hackfeld; Jeseong Park; Jayati Roy Choudhury; Satya Prakash; Louise Prakash
Journal:  J Biol Chem       Date:  2018-01-12       Impact factor: 5.157

7.  Implications for damage recognition during Dpo4-mediated mutagenic bypass of m1G and m3C lesions.

Authors:  Olga Rechkoblit; James C Delaney; John M Essigmann; Dinshaw J Patel
Journal:  Structure       Date:  2011-06-08       Impact factor: 5.006

8.  Y-family polymerase conformation is a major determinant of fidelity and translesion specificity.

Authors:  Ryan C Wilson; Meghan A Jackson; Janice D Pata
Journal:  Structure       Date:  2012-12-13       Impact factor: 5.006

9.  Replication past the butadiene diepoxide-derived DNA adduct S-[4-(N(6)-deoxyadenosinyl)-2,3-dihydroxybutyl]glutathione by DNA polymerases.

Authors:  Sung-Hee Cho; F Peter Guengerich
Journal:  Chem Res Toxicol       Date:  2013-06-04       Impact factor: 3.739

10.  Basis of miscoding of the DNA adduct N2,3-ethenoguanine by human Y-family DNA polymerases.

Authors:  Linlin Zhao; Matthew G Pence; Plamen P Christov; Zdzislaw Wawrzak; Jeong-Yun Choi; Carmelo J Rizzo; Martin Egli; F Peter Guengerich
Journal:  J Biol Chem       Date:  2012-08-21       Impact factor: 5.157

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