Literature DB >> 18275815

Protein-template-directed synthesis across an acrolein-derived DNA adduct by yeast Rev1 DNA polymerase.

Deepak T Nair1, Robert E Johnson, Louise Prakash, Satya Prakash, Aneel K Aggarwal.   

Abstract

Acrolein is generated as the end product of lipid peroxidation and is also a ubiquitous environmental pollutant. Its reaction with the N2 of guanine leads to a cyclic gamma-HOPdG adduct that presents a block to normal replication. We show here that yeast Rev1 incorporates the correct nucleotide C opposite a permanently ring-closed form of gamma-HOPdG (PdG) with nearly the same efficiency as opposite an undamaged G. The structural basis of this action lies in the eviction of the PdG adduct from the Rev1 active site, and the pairing of incoming dCTP with a "surrogate" arginine residue. We also show that yeast Polzeta can carry out the subsequent extension reaction. Together, our studies reveal how the exocyclic PdG adduct is accommodated in a DNA polymerase active site, and they show that the combined action of Rev1 and Polzeta provides for accurate and efficient synthesis through this potentially carcinogenic DNA lesion.

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Year:  2008        PMID: 18275815     DOI: 10.1016/j.str.2007.12.009

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  39 in total

1.  Structural basis for error-free replication of oxidatively damaged DNA by yeast DNA polymerase η.

Authors:  Timothy D Silverstein; Rinku Jain; Robert E Johnson; Louise Prakash; Satya Prakash; Aneel K Aggarwal
Journal:  Structure       Date:  2010-11-10       Impact factor: 5.006

2.  Yeast Rev1 protein promotes complex formation of DNA polymerase zeta with Pol32 subunit of DNA polymerase delta.

Authors:  Narottam Acharya; Robert E Johnson; Vincent Pagès; Louise Prakash; Satya Prakash
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-01       Impact factor: 11.205

Review 3.  Eukaryotic translesion polymerases and their roles and regulation in DNA damage tolerance.

Authors:  Lauren S Waters; Brenda K Minesinger; Mary Ellen Wiltrout; Sanjay D'Souza; Rachel V Woodruff; Graham C Walker
Journal:  Microbiol Mol Biol Rev       Date:  2009-03       Impact factor: 11.056

4.  Kinetic analysis of translesion synthesis opposite bulky N2- and O6-alkylguanine DNA adducts by human DNA polymerase REV1.

Authors:  Jeong-Yun Choi; F Peter Guengerich
Journal:  J Biol Chem       Date:  2008-06-30       Impact factor: 5.157

5.  Role of DNA damage-induced replication checkpoint in promoting lesion bypass by translesion synthesis in yeast.

Authors:  Vincent Pagès; Sergio R Santa Maria; Louise Prakash; Satya Prakash
Journal:  Genes Dev       Date:  2009-06-15       Impact factor: 11.361

Review 6.  Translesion DNA polymerases in eukaryotes: what makes them tick?

Authors:  Alexandra Vaisman; Roger Woodgate
Journal:  Crit Rev Biochem Mol Biol       Date:  2017-03-09       Impact factor: 8.250

Review 7.  Translesion DNA synthesis and mutagenesis in eukaryotes.

Authors:  Julian E Sale
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-03-01       Impact factor: 10.005

8.  Insertion of dNTPs opposite the 1,N2-propanodeoxyguanosine adduct by Sulfolobus solfataricus P2 DNA polymerase IV.

Authors:  Yazhen Wang; Sarah K Musser; Sam Saleh; Lawrence J Marnett; Martin Egli; Michael P Stone
Journal:  Biochemistry       Date:  2008-06-19       Impact factor: 3.162

9.  Structure and functional analysis of the BRCT domain of translesion synthesis DNA polymerase Rev1.

Authors:  John M Pryor; Lokesh Gakhar; M Todd Washington
Journal:  Biochemistry       Date:  2012-12-20       Impact factor: 3.162

10.  Solution structure of DNA containing alpha-OH-PdG: the mutagenic adduct produced by acrolein.

Authors:  Tanya Zaliznyak; Rahda Bonala; Sivaprasad Attaluri; Francis Johnson; Carlos de los Santos
Journal:  Nucleic Acids Res       Date:  2009-02-17       Impact factor: 16.971

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