Literature DB >> 19451653

NMR conformational and dynamic consequences of a gly to ser substitution in an osteogenesis imperfecta collagen model peptide.

Yingjie Li1, Barbara Brodsky, Jean Baum.   

Abstract

Close packing of three chains in a standard collagen triple helix requires Gly as every third residue. Missense mutations replacing one Gly by a larger residue in the tripeptide repeating sequence in type I collagen are common molecular causes of osteogenesis imperfecta. The structural and dynamic consequences of such mutations are addressed here by NMR studies on a peptide with a Gly-to-Ser substitution within an alpha1(I) sequence. Distances derived from nuclear Overhauser effects indicate that the three Ser residues are still packed in the center of the triple helix and that the standard 1-residue stagger is maintained. NMR dynamics using H-exchange and temperature-dependent amide chemical shifts indicate a greater disruption of hydrogen bonding and/or increased conformational flexibility C-terminal to the Ser site when compared with N terminal. This is consistent with recent suggestions relating clinical severity with an asymmetric effect of residues N- versus C-terminal to a mutation site. Dynamic studies also indicate that the relative position between a Gly in one chain and the mutation site in a neighboring staggered chain influences the disruption of the standard hydrogen-bonding pattern. The structural and dynamic alterations reported here may play a role in the etiology of osteogenesis imperfecta by affecting collagen secretion or interactions with other matrix molecules.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19451653      PMCID: PMC2742830          DOI: 10.1074/jbc.M109.018077

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  29 in total

1.  Computed free energy differences between point mutations in a collagen-like peptide.

Authors:  S D Mooney; C C Huang; P A Kollman; T E Klein
Journal:  Biopolymers       Date:  2001-03       Impact factor: 2.505

2.  Structural biology: Modelling collagen diseases.

Authors:  Barbara Brodsky; Jean Baum
Journal:  Nature       Date:  2008-06-19       Impact factor: 49.962

3.  Crystal and molecular structure of a collagen-like peptide at 1.9 A resolution.

Authors:  J Bella; M Eaton; B Brodsky; H M Berman
Journal:  Science       Date:  1994-10-07       Impact factor: 47.728

4.  Structural models of osteogenesis imperfecta-associated variants in the COL1A1 gene.

Authors:  Sean D Mooney; Teri E Klein
Journal:  Mol Cell Proteomics       Date:  2002-11       Impact factor: 5.911

Review 5.  Real-time NMR investigations of triple-helix folding and collagen folding diseases.

Authors:  J Baum; B Brodsky
Journal:  Fold Des       Date:  1997

Review 6.  Mutations in fibrillar collagens (types I, II, III, and XI), fibril-associated collagen (type IX), and network-forming collagen (type X) cause a spectrum of diseases of bone, cartilage, and blood vessels.

Authors:  H Kuivaniemi; G Tromp; D J Prockop
Journal:  Hum Mutat       Date:  1997       Impact factor: 4.878

7.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

8.  Sequence dependence of renucleation after a Gly mutation in model collagen peptides.

Authors:  Timothy J Hyde; Michael A Bryan; Barbara Brodsky; Jean Baum
Journal:  J Biol Chem       Date:  2006-09-22       Impact factor: 5.157

9.  NMR monitoring of chain-specific stability in heterotrimeric collagen peptides.

Authors:  Balaraman Madhan; Jianxi Xiao; Geetha Thiagarajan; Jean Baum; Barbara Brodsky
Journal:  J Am Chem Soc       Date:  2008-09-18       Impact factor: 15.419

10.  A novel approach for sequential assignment of 1H, 13C, and 15N spectra of proteins: heteronuclear triple-resonance three-dimensional NMR spectroscopy. Application to calmodulin.

Authors:  M Ikura; L E Kay; A Bax
Journal:  Biochemistry       Date:  1990-05-15       Impact factor: 3.162

View more
  16 in total

1.  CD and NMR investigation of collagen peptides mimicking a pathological Gly-Ser mutation and a natural interruption in a similar highly charged sequence context.

Authors:  Xiuxia Sun; Songqing Liu; Wenyuan Yu; Shaoru Wang; Jianxi Xiao
Journal:  Protein Sci       Date:  2015-11-26       Impact factor: 6.725

2.  Local conformation and dynamics of isoleucine in the collagenase cleavage site provide a recognition signal for matrix metalloproteinases.

Authors:  Jianxi Xiao; Rayna M Addabbo; Janelle L Lauer; Gregg B Fields; Jean Baum
Journal:  J Biol Chem       Date:  2010-08-02       Impact factor: 5.157

3.  Stability of Protein-Specific Hydration Shell on Crowding.

Authors:  Kuo-Ying Huang; Carolyn N Kingsley; Ryan Sheil; Chi-Yuan Cheng; Jan C Bierma; Kyle W Roskamp; Domarin Khago; Rachel W Martin; Songi Han
Journal:  J Am Chem Soc       Date:  2016-04-19       Impact factor: 15.419

4.  Osteogenesis imperfecta missense mutations in collagen: structural consequences of a glycine to alanine replacement at a highly charged site.

Authors:  Jianxi Xiao; Haiming Cheng; Teresita Silva; Jean Baum; Barbara Brodsky
Journal:  Biochemistry       Date:  2011-11-22       Impact factor: 3.162

5.  Osteogenesis imperfecta model peptides: incorporation of residues replacing Gly within a triple helix achieved by renucleation and local flexibility.

Authors:  Jianxi Xiao; Balaraman Madhan; Yingjie Li; Barbara Brodsky; Jean Baum
Journal:  Biophys J       Date:  2011-07-20       Impact factor: 4.033

Review 6.  Synthesis and biological applications of collagen-model triple-helical peptides.

Authors:  Gregg B Fields
Journal:  Org Biomol Chem       Date:  2010-01-20       Impact factor: 3.876

7.  Bacterial collagen-binding domain targets undertwisted regions of collagen.

Authors:  Sagaya Theresa Leena Philominathan; Takaki Koide; Osamu Matsushita; Joshua Sakon
Journal:  Protein Sci       Date:  2012-10       Impact factor: 6.725

8.  Local amino acid sequence patterns dominate the heterogeneous phenotype for the collagen connective tissue disease Osteogenesis Imperfecta resulting from Gly mutations.

Authors:  Jianxi Xiao; Zhangfu Yang; Xiuxia Sun; Rayna Addabbo; Jean Baum
Journal:  J Struct Biol       Date:  2015-05-15       Impact factor: 2.867

9.  Structural insights from (15)N relaxation data for an anisotropic collagen peptide.

Authors:  Jianxi Xiao; Jean Baum
Journal:  J Am Chem Soc       Date:  2009-12-30       Impact factor: 15.419

10.  Dynamic Water-Mediated Hydrogen Bonding in a Collagen Model Peptide.

Authors:  Iwen Fu; David A Case; Jean Baum
Journal:  Biochemistry       Date:  2015-10-06       Impact factor: 3.162

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.