Literature DB >> 19451544

Characterization of the miRNA-RISC loading complex and miRNA-RISC formed in the Drosophila miRNA pathway.

Keita Miyoshi1, Tomoko N Okada, Haruhiko Siomi, Mikiko C Siomi.   

Abstract

In Drosophila, miRNA is processed by Dicer-1 (DCR-1) from its precursor and loaded onto Argonaute1 (AGO1). AGO1 recognizes target mRNAs based on the miRNA sequence and suppresses the expression at post-transcriptional levels. GW182, a P-body component, localizes the AGO1 complex to processing bodies (P-bodies) where mRNA targets are decayed or stored. However, the details of the pathway remain elusive. In this study, two distinct types of AGO1-containing complexes from Drosophila Schneider2 (S2) cells were isolated and compared at the molecular level. The AGO1 complex with DCR-1 contained neither mature miRNA nor GW182 but exhibited pre-miRNA processing activity. The resultant mature RNA was loaded onto AGO1 within the complex. The AGO1 complex with GW182 excluded DCR-1, but possessed mature miRNA and showed no pre-miRNA processing activity. Thus, the AGO1-DCR-1 and AGO1-GW182 complexes correspond to miRLC (miRISC loading complex) and miRISC, respectively. The requirement for various domains of AGO1 in miRNA-loading and DCR-1/GW182 interaction was also examined. The Mid domain mutant (F2V2) interacted with DCR-1 but not with mature miRNA and GW182. The AGO1-PAZ mutant lacks the mature miRNA-binding ability but associates with either DCR-1 or GW182. The AGO1-PIWI mutant showed no Slicer activity but associates with mature miRNA. These results indicate that these domains are required differently for miRLC and miRISC formation in the miRNA pathway.

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Year:  2009        PMID: 19451544      PMCID: PMC2704077          DOI: 10.1261/rna.1541209

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  44 in total

1.  The crystal structure of the Argonaute2 PAZ domain reveals an RNA binding motif in RNAi effector complexes.

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Journal:  Nat Struct Biol       Date:  2003-11-16

2.  Crystal structure of Argonaute and its implications for RISC slicer activity.

Authors:  Ji-Joon Song; Stephanie K Smith; Gregory J Hannon; Leemor Joshua-Tor
Journal:  Science       Date:  2004-07-29       Impact factor: 47.728

3.  Role for a bidentate ribonuclease in the initiation step of RNA interference.

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Journal:  Nature       Date:  2001-01-18       Impact factor: 49.962

4.  R2D2, a bridge between the initiation and effector steps of the Drosophila RNAi pathway.

Authors:  Qinghua Liu; Tim A Rand; Savitha Kalidas; Fenghe Du; Hyun-Eui Kim; Dean P Smith; Xiaodong Wang
Journal:  Science       Date:  2003-09-26       Impact factor: 47.728

5.  Gene silencing mechanisms mediated by Aubergine piRNA complexes in Drosophila male gonad.

Authors:  Kazumichi M Nishida; Kuniaki Saito; Tomoko Mori; Yoshinori Kawamura; Tomoko Nagami-Okada; Sachi Inagaki; Haruhiko Siomi; Mikiko C Siomi
Journal:  RNA       Date:  2007-09-13       Impact factor: 4.942

6.  The nuclear RNase III Drosha initiates microRNA processing.

Authors:  Yoontae Lee; Chiyoung Ahn; Jinju Han; Hyounjeong Choi; Jaekwang Kim; Jeongbin Yim; Junho Lee; Patrick Provost; Olof Rådmark; Sunyoung Kim; V Narry Kim
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7.  A Dicer-2-dependent 80s complex cleaves targeted mRNAs during RNAi in Drosophila.

Authors:  John W Pham; Janice L Pellino; Young Sik Lee; Richard W Carthew; Erik J Sontheimer
Journal:  Cell       Date:  2004-04-02       Impact factor: 41.582

8.  Distinct roles for Drosophila Dicer-1 and Dicer-2 in the siRNA/miRNA silencing pathways.

Authors:  Young Sik Lee; Kenji Nakahara; John W Pham; Kevin Kim; Zhengying He; Erik J Sontheimer; Richard W Carthew
Journal:  Cell       Date:  2004-04-02       Impact factor: 41.582

9.  The GW182 protein colocalizes with mRNA degradation associated proteins hDcp1 and hLSm4 in cytoplasmic GW bodies.

Authors:  Theophany Eystathioy; Andrew Jakymiw; Edward K L Chan; Bertrand Séraphin; Nicolas Cougot; Marvin J Fritzler
Journal:  RNA       Date:  2003-10       Impact factor: 4.942

10.  RISC assembly defects in the Drosophila RNAi mutant armitage.

Authors:  Yukihide Tomari; Tingting Du; Benjamin Haley; Dianne S Schwarz; Ryan Bennett; Heather A Cook; Birgit S Koppetsch; William E Theurkauf; Phillip D Zamore
Journal:  Cell       Date:  2004-03-19       Impact factor: 41.582

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  45 in total

1.  Dicer is dispensable for asymmetric RISC loading in mammals.

Authors:  Juan G Betancur; Yukihide Tomari
Journal:  RNA       Date:  2011-11-21       Impact factor: 4.942

2.  Precursor microRNA-programmed silencing complex assembly pathways in mammals.

Authors:  Xuhang Liu; Dong-Yan Jin; Michael T McManus; Zissimos Mourelatos
Journal:  Mol Cell       Date:  2012-04-12       Impact factor: 17.970

3.  The true core of RNA silencing revealed.

Authors:  Hiroshi M Sasaki; Yukihide Tomari
Journal:  Nat Struct Mol Biol       Date:  2012-07-05       Impact factor: 15.369

4.  The nonsense-mediated decay pathway maintains synapse architecture and synaptic vesicle cycle efficacy.

Authors:  A Ashleigh Long; Cecon T Mahapatra; Elvin A Woodruff; Jeff Rohrbough; Hung-Tat Leung; Shikoh Shino; Lingling An; Rebecca W Doerge; Mark M Metzstein; William L Pak; Kendal Broadie
Journal:  J Cell Sci       Date:  2010-09-07       Impact factor: 5.285

5.  Endo-siRNAs depend on a new isoform of loquacious and target artificially introduced, high-copy sequences.

Authors:  Julia Verena Hartig; Stephanie Esslinger; Romy Böttcher; Kuniaki Saito; Klaus Förstemann
Journal:  EMBO J       Date:  2009-07-30       Impact factor: 11.598

Review 6.  The GW182 protein family in animal cells: new insights into domains required for miRNA-mediated gene silencing.

Authors:  Ana Eulalio; Felix Tritschler; Elisa Izaurralde
Journal:  RNA       Date:  2009-06-17       Impact factor: 4.942

7.  RISC hitches onto endosome trafficking.

Authors:  Haruhiko Siomi; Mikiko C Siomi
Journal:  Nat Cell Biol       Date:  2009-09       Impact factor: 28.824

8.  miR-18a downregulates DICER1 and promotes proliferation and metastasis of nasopharyngeal carcinoma.

Authors:  Xi Chen; Juan Wang; Lei Cheng; Mei-Ping Lu
Journal:  Int J Clin Exp Med       Date:  2014-04-15

9.  TRIM65 regulates microRNA activity by ubiquitination of TNRC6.

Authors:  Shitao Li; Lingyan Wang; Bishi Fu; Michael A Berman; Alos Diallo; Martin E Dorf
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-28       Impact factor: 11.205

10.  Molecular mechanisms that funnel RNA precursors into endogenous small-interfering RNA and microRNA biogenesis pathways in Drosophila.

Authors:  Keita Miyoshi; Tomohiro Miyoshi; Julia Verena Hartig; Haruhiko Siomi; Mikiko C Siomi
Journal:  RNA       Date:  2010-01-19       Impact factor: 4.942

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