Literature DB >> 19433630

Genomewide analysis reveals novel pathways affecting endoplasmic reticulum homeostasis, protein modification and quality control.

Alenka Copic1, Mariana Dorrington, Silvere Pagant, Justine Barry, Marcus C S Lee, Indira Singh, John L Hartman, Elizabeth A Miller.   

Abstract

To gain new mechanistic insight into ER homeostasis and the biogenesis of secretory proteins, we screened a genomewide collection of yeast mutants for defective intracellular retention of the ER chaperone, Kar2p. We identified 87 Kar2p-secreting strains, including a number of known components in secretory protein modification and sorting. Further characterization of the 73 nonessential Kar2p retention mutants revealed roles for a number of novel gene products in protein glycosylation, GPI-anchor attachment, ER quality control, and retrieval of escaped ER residents. A subset of these mutants, required for ER retrieval, included the GET complex and two novel proteins that likely function similarly in membrane insertion of tail-anchored proteins. Finally, the variant histone, Htz1p, and its acetylation state seem to play an important role in maintaining ER retrieval pathways, suggesting a surprising link between chromatin remodeling and ER homeostasis.

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Year:  2009        PMID: 19433630      PMCID: PMC2710157          DOI: 10.1534/genetics.109.101105

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  56 in total

Review 1.  Protein quality control in the early secretory pathway.

Authors:  Tiziana Anelli; Roberto Sitia
Journal:  EMBO J       Date:  2008-01-23       Impact factor: 11.598

Review 2.  Protein glycosylation, conserved from yeast to man: a model organism helps elucidate congenital human diseases.

Authors:  Ludwig Lehle; Sabine Strahl; Widmar Tanner
Journal:  Angew Chem Int Ed Engl       Date:  2006-10-20       Impact factor: 15.336

3.  The sensitivity of yeast mutants to oleic acid implicates the peroxisome and other processes in membrane function.

Authors:  Daniel Lockshon; Lauren E Surface; Emily O Kerr; Matt Kaeberlein; Brian K Kennedy
Journal:  Genetics       Date:  2006-12-06       Impact factor: 4.562

4.  Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map.

Authors:  Sean R Collins; Kyle M Miller; Nancy L Maas; Assen Roguev; Jeffrey Fillingham; Clement S Chu; Maya Schuldiner; Marinella Gebbia; Judith Recht; Michael Shales; Huiming Ding; Hong Xu; Junhong Han; Kristin Ingvarsdottir; Benjamin Cheng; Brenda Andrews; Charles Boone; Shelley L Berger; Phil Hieter; Zhiguo Zhang; Grant W Brown; C James Ingles; Andrew Emili; C David Allis; David P Toczyski; Jonathan S Weissman; Jack F Greenblatt; Nevan J Krogan
Journal:  Nature       Date:  2007-02-21       Impact factor: 49.962

5.  Identification of yeast proteins necessary for cell-surface function of a potassium channel.

Authors:  Friederike A Haass; Martin Jonikas; Peter Walter; Jonathan S Weissman; Yuh-Nung Jan; Lily Y Jan; Maya Schuldiner
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-07       Impact factor: 11.205

6.  Yeast ARV1 is required for efficient delivery of an early GPI intermediate to the first mannosyltransferase during GPI assembly and controls lipid flow from the endoplasmic reticulum.

Authors:  Kentaro Kajiwara; Reika Watanabe; Harald Pichler; Kensuke Ihara; Suguru Murakami; Howard Riezman; Kouichi Funato
Journal:  Mol Biol Cell       Date:  2008-02-20       Impact factor: 4.138

Review 7.  Thematic review series: lipid posttranslational modifications. GPI anchoring of protein in yeast and mammalian cells, or: how we learned to stop worrying and love glycophospholipids.

Authors:  Peter Orlean; Anant K Menon
Journal:  J Lipid Res       Date:  2007-03-14       Impact factor: 5.922

8.  Inhibiting endoplasmic reticulum (ER)-associated degradation of misfolded Yor1p does not permit ER export despite the presence of a diacidic sorting signal.

Authors:  Silvere Pagant; Leslie Kung; Mariana Dorrington; Marcus C S Lee; Elizabeth A Miller
Journal:  Mol Biol Cell       Date:  2007-07-05       Impact factor: 4.138

Review 9.  Exploring genetic interactions and networks with yeast.

Authors:  Charles Boone; Howard Bussey; Brenda J Andrews
Journal:  Nat Rev Genet       Date:  2007-06       Impact factor: 53.242

10.  The yeast p24 complex is required for the formation of COPI retrograde transport vesicles from the Golgi apparatus.

Authors:  Auxiliadora Aguilera-Romero; Joanna Kaminska; Anne Spang; Howard Riezman; Manuel Muñiz
Journal:  J Cell Biol       Date:  2008-02-18       Impact factor: 10.539

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  36 in total

1.  ER cargo properties specify a requirement for COPII coat rigidity mediated by Sec13p.

Authors:  Alenka Copic; Catherine F Latham; Max A Horlbeck; Jennifer G D'Arcangelo; Elizabeth A Miller
Journal:  Science       Date:  2012-02-02       Impact factor: 47.728

2.  POD1 regulates pollen tube guidance in response to micropylar female signaling and acts in early embryo patterning in Arabidopsis.

Authors:  Hong-Ju Li; Yong Xue; Dong-Jie Jia; Tong Wang; Dong-Qiao Hi; Jie Liu; Feng Cui; Qi Xie; De Ye; Wei-Cai Yang
Journal:  Plant Cell       Date:  2011-09-27       Impact factor: 11.277

3.  Hph1 and Hph2 are novel components of the Sec63/Sec62 posttranslational translocation complex that aid in vacuolar proton ATPase biogenesis.

Authors:  Francisco J Piña; Allyson F O'Donnell; Silvere Pagant; Hai Lan Piao; John P Miller; Stanley Fields; Elizabeth A Miller; Martha S Cyert
Journal:  Eukaryot Cell       Date:  2010-11-19

4.  Traffic of p24 Proteins and COPII Coat Composition Mutually Influence Membrane Scaffolding.

Authors:  Jennifer G D'Arcangelo; Jonathan Crissman; Silvere Pagant; Alenka Čopič; Catherine F Latham; Erik L Snapp; Elizabeth A Miller
Journal:  Curr Biol       Date:  2015-04-30       Impact factor: 10.834

5.  Pex35 is a regulator of peroxisome abundance.

Authors:  Ido Yofe; Kareem Soliman; Silvia G Chuartzman; Bruce Morgan; Uri Weill; Eden Yifrach; Tobias P Dick; Sara J Cooper; Christer S Ejsing; Maya Schuldiner; Einat Zalckvar; Sven Thoms
Journal:  J Cell Sci       Date:  2017-01-03       Impact factor: 5.285

6.  Hac1 function revealed by the protein expression profile of a OtHAC1 mutant of thermotolerant methylotrophic yeast Ogataea thermomethanolica.

Authors:  Chitwadee Phithakrotchanakoon; Aekkachai Puseenam; Narumon Phaonakrop; Sittiruk Roytrakul; Sutipa Tanapongpipat; Niran Roongsawang
Journal:  Mol Biol Rep       Date:  2018-07-31       Impact factor: 2.316

Review 7.  Chromatin and transcription in yeast.

Authors:  Oliver J Rando; Fred Winston
Journal:  Genetics       Date:  2012-02       Impact factor: 4.562

8.  A conserved archaeal pathway for tail-anchored membrane protein insertion.

Authors:  John Sherrill; Malaiyalam Mariappan; Pawel Dominik; Ramanujan S Hegde; Robert J Keenan
Journal:  Traffic       Date:  2011-07-03       Impact factor: 6.215

9.  A ribosome-associating factor chaperones tail-anchored membrane proteins.

Authors:  Malaiyalam Mariappan; Xingzhe Li; Sandra Stefanovic; Ajay Sharma; Agnieszka Mateja; Robert J Keenan; Ramanujan S Hegde
Journal:  Nature       Date:  2010-08-01       Impact factor: 49.962

Review 10.  The contribution of systematic approaches to characterizing the proteins and functions of the endoplasmic reticulum.

Authors:  Maya Schuldiner; Jonathan S Weissman
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-03-01       Impact factor: 10.005

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