Literature DB >> 19432493

Benchmark experimental data set and assessment of adsorption free energy for peptide-surface interactions.

Yang Wei1, Robert A Latour.   

Abstract

With the increasing interest in protein adsorption in fields ranging from bionanotechnology to biomedical engineering, there is a growing need to understand protein-surface interactions at a fundamental level, such as the interaction between individual amino acid residues of a protein and functional groups presented by a surface. However, relatively little data are available that experimentally provide a quantitative, comparative measure of these types of interactions. To address this deficiency, the objective of this study was to generate a database of experimentally measured standard state adsorption free energy (DeltaGoads) values for a wide variety of amino acid residue-surface interactions using a host-guest peptide and alkanethiol self-assembled monolayers (SAMs) with polymer-like functionality as the model system. The host-guest amino acid sequence was synthesized in the form of TGTG-X-GTGT, where G and T are glycine and threonine amino acid residues and X represents a variable residue. In this paper, we report DeltaGoads values for the adsorption of 12 different types of the host-guest peptides on a set of nine different SAM surfaces, for a total of 108 peptide-surface systems. The DeltaGoads values for these 108 peptide-surface combinations show clear trends in adsorption behavior that are dependent on both peptide composition and surface chemistry. These data provide a benchmark experimental data set from which fundamental interactions that govern peptide and protein adsorption behavior can be better understood and compared.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19432493      PMCID: PMC2756418          DOI: 10.1021/la8042186

Source DB:  PubMed          Journal:  Langmuir        ISSN: 0743-7463            Impact factor:   3.882


  53 in total

1.  Protein chemistry at membrane interfaces: non-additivity of electrostatic and hydrophobic interactions.

Authors:  A S Ladokhin; S H White
Journal:  J Mol Biol       Date:  2001-06-08       Impact factor: 5.469

2.  On the simulation of protein folding by short time scale molecular dynamics and distributed computing.

Authors:  Alan R Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-18       Impact factor: 11.205

3.  Membrane perturbation induced by interfacially adsorbed peptides.

Authors:  Assaf Zemel; Avinoam Ben-Shaul; Sylvio May
Journal:  Biophys J       Date:  2004-06       Impact factor: 4.033

4.  Determination of apparent thermodynamic parameters for adsorption of a midchain peptidyl residue onto a glass surface.

Authors:  R A Latour; S D Trembley; Y Tian; G C Lickfield; A P Wheeler
Journal:  J Biomed Mater Res       Date:  2000-01

5.  An experiment-based algorithm for predicting the partitioning of unfolded peptides into phosphatidylcholine bilayer interfaces.

Authors:  Kalina Hristova; Stephen H White
Journal:  Biochemistry       Date:  2005-09-20       Impact factor: 3.162

Review 6.  Combining experiment and simulation in protein folding: closing the gap for small model systems.

Authors:  R Dustin Schaeffer; Alan Fersht; Valerie Daggett
Journal:  Curr Opin Struct Biol       Date:  2008-02-01       Impact factor: 6.809

7.  Membrane adsorption, folding, insertion and translocation of synthetic trans-membrane peptides.

Authors:  Martin B Ulmschneider; Jakob P Ulmschneider
Journal:  Mol Membr Biol       Date:  2008-04       Impact factor: 2.857

8.  A peptide motif recognizing a polymer stereoregularity.

Authors:  Takeshi Serizawa; Toshiki Sawada; Hisao Matsuno; Teruhiko Matsubara; Toshinori Sato
Journal:  J Am Chem Soc       Date:  2005-10-12       Impact factor: 15.419

9.  Interfacial folding and membrane insertion of a designed helical peptide.

Authors:  Alexey S Ladokhin; Stephen H White
Journal:  Biochemistry       Date:  2004-05-18       Impact factor: 3.162

10.  Modeling of peptide adsorption interactions with a poly(lactic acid) surface.

Authors:  C P O'Brien; S J Stuart; D A Bruce; R A Latour
Journal:  Langmuir       Date:  2008-12-16       Impact factor: 3.882

View more
  18 in total

1.  Effect of solid surface charge on the binding behaviour of a metal-binding peptide.

Authors:  Senem Donatan; Mehmet Sarikaya; Candan Tamerler; Mustafa Urgen
Journal:  J R Soc Interface       Date:  2012-04-04       Impact factor: 4.118

2.  Correlation between desorption force measured by atomic force microscopy and adsorption free energy measured by surface plasmon resonance spectroscopy for peptide-surface interactions.

Authors:  Yang Wei; Robert A Latour
Journal:  Langmuir       Date:  2010-11-12       Impact factor: 3.882

Review 3.  Force fields for simulating the interaction of surfaces with biological molecules.

Authors:  Lewis Martin; Marcela M Bilek; Anthony S Weiss; Serdar Kuyucak
Journal:  Interface Focus       Date:  2016-02-06       Impact factor: 3.906

4.  Perspectives on the simulation of protein-surface interactions using empirical force field methods.

Authors:  Robert A Latour
Journal:  Colloids Surf B Biointerfaces       Date:  2014-06-30       Impact factor: 5.268

5.  Parameterization of an interfacial force field for accurate representation of peptide adsorption free energy on high-density polyethylene.

Authors:  Tigran M Abramyan; James A Snyder; Jeremy A Yancey; Aby A Thyparambil; Yang Wei; Steven J Stuart; Robert A Latour
Journal:  Biointerphases       Date:  2015-06-27       Impact factor: 2.456

6.  Exploring Protein-Nanoparticle Interactions with Coarse-Grained Protein Folding Models.

Authors:  Shuai Wei; Logan S Ahlstrom; Charles L Brooks
Journal:  Small       Date:  2017-03-07       Impact factor: 13.281

7.  Application of advanced sampling and analysis methods to predict the structure of adsorbed protein on a material surface.

Authors:  Tigran M Abramyan; David L Hyde-Volpe; Steven J Stuart; Robert A Latour
Journal:  Biointerphases       Date:  2017-05-17       Impact factor: 2.456

8.  Interfacial orientation and secondary structure change in tachyplesin I: molecular dynamics and sum frequency generation spectroscopy studies.

Authors:  Andrew P Boughton; Khoi Nguyen; Ioan Andricioaei; Zhan Chen
Journal:  Langmuir       Date:  2011-11-04       Impact factor: 3.882

9.  Determination of peptide-surface adsorption free energy for material surfaces not conducive to SPR or QCM using AFM.

Authors:  Aby A Thyparambil; Yang Wei; Robert A Latour
Journal:  Langmuir       Date:  2012-03-20       Impact factor: 3.882

10.  Peptide-surface adsorption free energy comparing solution conditions ranging from low to medium salt concentrations.

Authors:  Yang Wei; Aby A Thyparambil; Robert A Latour
Journal:  Chemphyschem       Date:  2012-10-05       Impact factor: 3.102

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.