Literature DB >> 19429616

Dominant negative autoregulation limits steady-state repression levels in gene networks.

Szabolcs Semsey1, Sandeep Krishna, János Erdossy, Péter Horváth, László Orosz, Kim Sneppen, Sankar Adhya.   

Abstract

Many transcription factors repress transcription of their own genes. Negative autoregulation has been shown to reduce cell-cell variation in regulatory protein levels and speed up the response time in gene networks. In this work we examined transcription regulation of the galS gene and the function of its product, the GalS protein. We observed a unique operator preference of the GalS protein characterized by dominant negative autoregulation. We show that this pattern of regulation limits the repression level of the target genes in steady states. We suggest that transcription factors with dominant negative autoregulation are designed for regulating gene expression during environmental transitions.

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Year:  2009        PMID: 19429616      PMCID: PMC2704710          DOI: 10.1128/JB.00056-09

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  19 in total

1.  Engineering stability in gene networks by autoregulation.

Authors:  A Becskei; L Serrano
Journal:  Nature       Date:  2000-06-01       Impact factor: 49.962

2.  Noise-based switches and amplifiers for gene expression.

Authors:  J Hasty; J Pradines; M Dolnik; J J Collins
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-29       Impact factor: 11.205

3.  Network motifs in the transcriptional regulation network of Escherichia coli.

Authors:  Shai S Shen-Orr; Ron Milo; Shmoolik Mangan; Uri Alon
Journal:  Nat Genet       Date:  2002-04-22       Impact factor: 38.330

4.  Operator-bound GalR dimers close DNA loops by direct interaction: tetramerization and inducer binding.

Authors:  Szabolcs Semsey; Mark Geanacopoulos; Dale E A Lewis; Sankar Adhya
Journal:  EMBO J       Date:  2002-08-15       Impact factor: 11.598

Review 5.  Network motifs: theory and experimental approaches.

Authors:  Uri Alon
Journal:  Nat Rev Genet       Date:  2007-06       Impact factor: 53.242

6.  From specific gene regulation to genomic networks: a global analysis of transcriptional regulation in Escherichia coli.

Authors:  D Thieffry; A M Huerta; E Pérez-Rueda; J Collado-Vides
Journal:  Bioessays       Date:  1998-05       Impact factor: 4.345

7.  Functional characterization of roles of GalR and GalS as regulators of the gal regulon.

Authors:  M Geanacopoulos; S Adhya
Journal:  J Bacteriol       Date:  1997-01       Impact factor: 3.490

8.  Signal integration in the galactose network of Escherichia coli.

Authors:  Szabolcs Semsey; Sandeep Krishna; Kim Sneppen; Sankar Adhya
Journal:  Mol Microbiol       Date:  2007-07       Impact factor: 3.501

Review 9.  Positive feedback in cellular control systems.

Authors:  Alexander Y Mitrophanov; Eduardo A Groisman
Journal:  Bioessays       Date:  2008-06       Impact factor: 4.345

10.  Noise propagation and signaling sensitivity in biological networks: a role for positive feedback.

Authors:  Gil Hornung; Naama Barkai
Journal:  PLoS Comput Biol       Date:  2007-12-05       Impact factor: 4.475

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  10 in total

1.  Galactose repressor mediated intersegmental chromosomal connections in Escherichia coli.

Authors:  Zhong Qian; Emilios K Dimitriadis; Rotem Edgar; Prahathees Eswaramoorthy; Sankar Adhya
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-25       Impact factor: 11.205

2.  Timing of gene transcription in the galactose utilization system of Escherichia coli.

Authors:  Péter Horváth; Alexander Hunziker; János Erdossy; Sandeep Krishna; Szabolcs Semsey
Journal:  J Biol Chem       Date:  2010-10-05       Impact factor: 5.157

3.  A Novel Dual-cre Motif Enables Two-Way Autoregulation of CcpA in Clostridium acetobutylicum.

Authors:  Lu Zhang; Yanqiang Liu; Yunpeng Yang; Weihong Jiang; Yang Gu
Journal:  Appl Environ Microbiol       Date:  2018-04-02       Impact factor: 4.792

4.  Characterization of the DNA-binding properties of the Mohawk homeobox transcription factor.

Authors:  Douglas M Anderson; Rajani George; Marcus B Noyes; Megan Rowton; Wenjin Liu; Rulang Jiang; Scot A Wolfe; Jeanne Wilson-Rawls; Alan Rawls
Journal:  J Biol Chem       Date:  2012-08-24       Impact factor: 5.157

5.  Relation of intracellular signal levels and promoter activities in the gal regulon of Escherichia coli.

Authors:  Sandeep Krishna; László Orosz; Kim Sneppen; Sankar Adhya; Szabolcs Semsey
Journal:  J Mol Biol       Date:  2009-06-23       Impact factor: 5.469

6.  Structure and function of the D-galactose network in enterobacteria.

Authors:  Zsolt Csiszovszki; Sandeep Krishna; László Orosz; Sankar Adhya; Szabolcs Semsey
Journal:  mBio       Date:  2011-06-28       Impact factor: 7.867

7.  The effect of LacI autoregulation on the performance of the lactose utilization system in Escherichia coli.

Authors:  Szabolcs Semsey; Liselotte Jauffred; Zsolt Csiszovszki; János Erdossy; Viktor Stéger; Sabine Hansen; Sandeep Krishna
Journal:  Nucleic Acids Res       Date:  2013-05-08       Impact factor: 16.971

8.  Positive autoregulation shapes response timing and intensity in two-component signal transduction systems.

Authors:  Alexander Y Mitrophanov; Tricia J Hadley; Eduardo A Groisman
Journal:  J Mol Biol       Date:  2010-06-30       Impact factor: 5.469

9.  A mixed incoherent feed-forward loop allows conditional regulation of response dynamics.

Authors:  Szabolcs Semsey
Journal:  PLoS One       Date:  2014-03-12       Impact factor: 3.240

10.  Inherent regulatory asymmetry emanating from network architecture in a prevalent autoregulatory motif.

Authors:  Md Zulfikar Ali; Vinuselvi Parisutham; Sandeep Choubey; Robert C Brewster
Journal:  Elife       Date:  2020-08-18       Impact factor: 8.140

  10 in total

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