Literature DB >> 19420139

Analysis of Dom34 and its function in no-go decay.

Dario O Passos1, Meenakshi K Doma, Christopher J Shoemaker, Denise Muhlrad, Rachel Green, Jonathan Weissman, Julie Hollien, Roy Parker.   

Abstract

Eukaryotic mRNAs are subject to quality control mechanisms that degrade defective mRNAs. In yeast, mRNAs with stalls in translation elongation are targeted for endonucleolytic cleavage by No-Go decay (NGD). The cleavage triggered by No-Go decay is dependent on Dom34p and Hbs1p, and Dom34 has been proposed to be the endonuclease responsible for mRNA cleavage. We created several Dom34 mutants and examined their effects on NGD in yeast. We identified mutations in several loops of the Dom34 structure that affect NGD. In contrast, mutations inactivating the proposed nuclease domain do not affect NGD in vivo. Moreover, we observed that overexpression of the Rps30a protein, a high copy suppressor of dom34Delta cold sensitivity, can restore some mRNA cleavage in a dom34Delta strain. These results identify important functional regions of Dom34 and suggest that the proposed endonuclease activity of Dom34 is not required for mRNA cleavage in NGD. We also provide evidence that the process of NGD is conserved in insect cells. On the basis of these results and the process of translation termination, we suggest a multistep model for the process of NGD.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19420139      PMCID: PMC2704154          DOI: 10.1091/mbc.e09-01-0028

Source DB:  PubMed          Journal:  Mol Biol Cell        ISSN: 1059-1524            Impact factor:   4.138


  24 in total

1.  An mRNA surveillance mechanism that eliminates transcripts lacking termination codons.

Authors:  Pamela A Frischmeyer; Ambro van Hoof; Kathryn O'Donnell; Anthony L Guerrerio; Roy Parker; Harry C Dietz
Journal:  Science       Date:  2002-03-22       Impact factor: 47.728

2.  Exosome-mediated recognition and degradation of mRNAs lacking a termination codon.

Authors:  Ambro van Hoof; Pamela A Frischmeyer; Harry C Dietz; Roy Parker
Journal:  Science       Date:  2002-03-22       Impact factor: 47.728

3.  Evolution of the eukaryotic translation termination system: origins of release factors.

Authors:  Y Inagaki; W Ford Doolittle
Journal:  Mol Biol Evol       Date:  2000-06       Impact factor: 16.240

4.  Computational modeling and experimental analysis of nonsense-mediated decay in yeast.

Authors:  Dan Cao; Roy Parker
Journal:  Cell       Date:  2003-05-16       Impact factor: 41.582

Review 5.  Nonsense-mediated mRNA decay: splicing, translation and mRNP dynamics.

Authors:  Lynne E Maquat
Journal:  Nat Rev Mol Cell Biol       Date:  2004-02       Impact factor: 94.444

6.  Crystal structure and functional analysis of the eukaryotic class II release factor eRF3 from S. pombe.

Authors:  Chunguang Kong; Koichi Ito; Martin A Walsh; Miki Wada; Yuying Liu; Sundramurthy Kumar; David Barford; Yoshikazu Nakamura; Haiwei Song
Journal:  Mol Cell       Date:  2004-04-23       Impact factor: 17.970

7.  The crystal structure of human eukaryotic release factor eRF1--mechanism of stop codon recognition and peptidyl-tRNA hydrolysis.

Authors:  H Song; P Mugnier; A K Das; H M Webb; D R Evans; M F Tuite; B A Hemmings; D Barford
Journal:  Cell       Date:  2000-02-04       Impact factor: 41.582

8.  Novel G-protein complex whose requirement is linked to the translational status of the cell.

Authors:  Anne Carr-Schmid; Christine Pfund; Elizabeth A Craig; Terri Goss Kinzy
Journal:  Mol Cell Biol       Date:  2002-04       Impact factor: 4.272

9.  Depurination of Brome mosaic virus RNA3 in vivo results in translation-dependent accelerated degradation of the viral RNA.

Authors:  Rikesh Gandhi; Mahira Manzoor; Katalin A Hudak
Journal:  J Biol Chem       Date:  2008-09-24       Impact factor: 5.157

Review 10.  Eukaryotic release factors (eRFs) history.

Authors:  Sergei Inge-Vechtomov; Galina Zhouravleva; Michel Philippe
Journal:  Biol Cell       Date:  2003 May-Jun       Impact factor: 4.458

View more
  60 in total

1.  Translation drives mRNA quality control.

Authors:  Christopher J Shoemaker; Rachel Green
Journal:  Nat Struct Mol Biol       Date:  2012-06-05       Impact factor: 15.369

Review 2.  Novel endoribonucleases as central players in various pathways of eukaryotic RNA metabolism.

Authors:  Rafal Tomecki; Andrzej Dziembowski
Journal:  RNA       Date:  2010-07-30       Impact factor: 4.942

Review 3.  All things must pass: contrasts and commonalities in eukaryotic and bacterial mRNA decay.

Authors:  Joel G Belasco
Journal:  Nat Rev Mol Cell Biol       Date:  2010-06-03       Impact factor: 94.444

4.  Dissection of Dom34-Hbs1 reveals independent functions in two RNA quality control pathways.

Authors:  Antonia M G van den Elzen; Julien Henri; Noureddine Lazar; María Eugenia Gas; Dominique Durand; François Lacroute; Magali Nicaise; Herman van Tilbeurgh; Bertrand Séraphin; Marc Graille
Journal:  Nat Struct Mol Biol       Date:  2010-11-21       Impact factor: 15.369

5.  Structural basis for mRNA surveillance by archaeal Pelota and GTP-bound EF1α complex.

Authors:  Kan Kobayashi; Izumi Kikuno; Kazushige Kuroha; Kazuki Saito; Koichi Ito; Ryuichiro Ishitani; Toshifumi Inada; Osamu Nureki
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-27       Impact factor: 11.205

6.  Receptor for activated C kinase 1 stimulates nascent polypeptide-dependent translation arrest.

Authors:  Kazushige Kuroha; Mayuko Akamatsu; Lyudmila Dimitrova; Takehiko Ito; Yuki Kato; Katsuhiko Shirahige; Toshifumi Inada
Journal:  EMBO Rep       Date:  2010-11-12       Impact factor: 8.807

7.  Release factor eRF3 mediates premature translation termination on polylysine-stalled ribosomes in Saccharomyces cerevisiae.

Authors:  Marco Chiabudini; Arlette Tais; Ying Zhang; Sachiko Hayashi; Tina Wölfle; Edith Fitzke; Sabine Rospert
Journal:  Mol Cell Biol       Date:  2014-08-25       Impact factor: 4.272

8.  Why Dom34 stimulates growth of cells with defects of 40S ribosomal subunit biosynthesis.

Authors:  Arpita Bhattacharya; Kerri B McIntosh; Ian M Willis; Jonathan R Warner
Journal:  Mol Cell Biol       Date:  2010-09-27       Impact factor: 4.272

Review 9.  The intimate relationships of mRNA decay and translation.

Authors:  Bijoyita Roy; Allan Jacobson
Journal:  Trends Genet       Date:  2013-09-30       Impact factor: 11.639

10.  Plasmodium falciparum translational machinery condones polyadenosine repeats.

Authors:  Slavica Pavlovic Djuranovic; Jessey Erath; Ryan J Andrews; Peter O Bayguinov; Joyce J Chung; Douglas L Chalker; James Aj Fitzpatrick; Walter N Moss; Pawel Szczesny; Sergej Djuranovic
Journal:  Elife       Date:  2020-05-29       Impact factor: 8.140

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.