| Literature DB >> 19409091 |
Jane H Wang1, Xin Zheng, Xiaogang Ke, M Tevfik Dorak, Jingjing Shen, Basmattee Boodram, Maurice O'Gorman, Kenneth Beaman, Scott J Cotler, Ronald Hershow, Lijun Rong.
Abstract
BACKGROUND: The association of human leukocyte antigen (HLA) genes with the outcome of hepatitis C virus (HCV) infection may be modified by ethnic and geographical differences.Entities:
Mesh:
Substances:
Year: 2009 PMID: 19409091 PMCID: PMC2679741 DOI: 10.1186/1743-422X-6-46
Source DB: PubMed Journal: Virol J ISSN: 1743-422X Impact factor: 4.099
Characteristics of study subjects
| HCV | Race (%) | Gender (%) | Age | Inf time (yrs) | Total | ||
| Infection | Cauc | non-Cauc | Male | Female | Mean (range) | Mean (range) | (n) |
| Persistence | 33 (58.9) | 23 (41.1) | 33 (58.9) | 23 (41.1) | 25.6 (19~32) | 2.5 (0.1~6.0) | 56 |
| Clearance | 23 (46.9) | 26 (53.1) | 29 (59.2) | 20 (40.8) | 26.0 (19~33) | 2.6 (0.1~6.6) | 49 |
Note: Cauc: Caucasian; Inf: infection; yrs: years; n: number.
HLA-class I allele frequencies of HCV infected subjects
| Allele | Chronic(%) 2n = 112 | Clearance (%) 2n = 98 | Odds Ratio | 95% CI | p-value |
| A*01 | 15.2 | 9.18 | 2.05 | 0.79–5.32 | 0.14 |
| A*02 | 26.8 | 26.0 | 1.04 | 0.48–2.24 | 0.92 |
| Caucasian | 30.3 | 17.4 | 0.82–5.21 | 0.12 | |
| non-Cauc | 21.7 | 32.7 | 0.23–1.42 | 0.23 | |
| A*03* | 9.82 | 16.7 | 0.54 | 0.24–1.20 | 0.14 |
| A*11 | 3.57 | 6.25 | 0.55 | 0.15–2.08 | 0.38 |
| A*23 | 1.79 | 4.17 | 0.42 | 0.07–2.38 | 0.33 |
| A*24 | 10.7 | 15.0 | 0.94 | 0.37–2.38 | 0.90 |
| A*25 | 1.79 | 1.25 | 1.78 | 0.16–20.2 | 0.64 |
| A*29 | 5.34 | 1.25 | 0.18 | 0.02–1.50 | 0.12 |
| A*30 | 7.14 | 3.12 | 2.56 | 0.64–10.2 | 0.19 |
| A*31 | 3.57 | 5.21 | 0.68 | 0.17–2.68 | 0.58 |
| A*32 | 1.79 | 4.17 | 0.42 | 0.07–2.38 | 0.33 |
| A*33 | 2.68 | 1.04 | 2.71 | 0.27–27.0 | 0.39 |
| A*68 | 2.68 | 4.17 | 0.64 | 0.14–2.08 | 2.99 |
| A*74 | 2.68 | 1.04 | 0.37 | 0.04–3.66 | 0.62 |
| Cw*01 | 1.79 | 4.08 | 0.57 | 0.09–3.55 | 0.55 |
| Cw*02 | 9.84 | 7.16 | 1.47 | 0.52–4.13 | 0.47 |
| Cw*03 | 10.7 | 9.18 | 1.21 | 0.46–3.18 | 0.70 |
| Cw*04 | 16.9 | 13.2 | 1.31 | 0.56–3.06 | 0.53 |
| Cw*05 | 0.89 | 7.16 | |||
| Cw*06 | 8.94 | 9.18 | 1.11 | 0.40–3.09 | 0.84 |
| Cw*07 | 28.6 | 28.6 | 0.88 | 0.41–1.91 | 0.75 |
| Cw*08 | 4.46 | 3.06 | 1.18 | 0.25–5.55 | 0.84 |
| Cw*12 | 3.58 | 6.12 | 0.55 | 0.15–2.08 | 0.38 |
| Cw*15 | 3.58 | 2.05 | 1.81 | 0.32–10.3 | 0.51 |
| Cw*16 | 7.15 | 8.16 | 0.85 | 0.29–2.48 | 0.77 |
*: A*03 is protective for non-Caucasians, OR = 0.20, 95% CI = 0.04–1.01, P = 0.04
Note: Only those alleles except Cw*05 with more than 1.0% frequency in both comparison groups are shown.
Non-Cauc: non-Caucasians.
HLA-class II allele frequencies of HCV infected subjects
| Allele | Chronic (%) | Clearance (%) | Odds Ratio | 95% CI | p-value |
| DRB1*01 | 6.25 | 14.6 | |||
| Caucasian | 7.58 | 19.6 | |||
| DRB1*03 | 14.3 | 10.4 | 1.56 | 0.63 – 3.86 | 0.34 |
| DRB1*04 | 13.4 | 18.7 | 0.83 | 0.35 – 1.98 | 0.68 |
| DRB1*07 | 17.0 | 8.35 | |||
| DRB1*09 | 1.60 | 2.08 | 0.87 | 0.12 – 6.24 | 0.89 |
| DRB1*11 | 10.7 | 12.5 | 0.84 | 0.34 – 2.09 | 0.71 |
| DRB1*12 | 4.46 | 6.25 | 0.70 | 0.20 – 2.46 | 0.58 |
| DRB1*13 | 16.1 | 9.38 | 1.62 | 0.64 – 4.12 | 0.31 |
| DRB1*14 | 3.70 | 8.35 | 0.46 | 0.12 – 1.68 | 0.24 |
| DRB1*15 | 9.82 | 6.25 | 1.75 | 0.60 – 5.15 | 0.31 |
| DRB1*16 | 2.67 | 2.08 | 1.33 | 0.21 – 8.31 | 0.76 |
| DQB1*02 | 25.9 | 16.3 | 1.79 | 0.91 – 3.54 | 0.09 |
| Caucasian | 34.8 | 15.2 | |||
| DQB1*03 | 28.6 | 40.8 | |||
| non-Cauc | 23.9 | 44.2 | |||
| DQB1*04 | 5.40 | 2.10 | 4.24 | 0.76 – 23.6 | 0.10 |
| DQB1*05 | 10.7 | 21.4 | |||
| Caucasian | 9.10 | 23.9 | |||
| DRB1*06 | 29.4 | 19.4 | 1.72 | 0.79 – 3.76 | 0.17 |
Note: only alleles with more than 1.0% frequency in both comparison groups are shown. non-Cauc: non-Caucasian.
Protective and susceptibility HLA-alleles in different races
| Caucasians | non-Caucasian Americans* | ||||
| Allele | European | American | AA | HL | Reference |
| A*02 | Chicago | Chicago | Present | ||
| A*03 | Irish** | Chicago | Chicago | 15, Present | |
| A*11 | Baltimore | Baltimore | 17 | ||
| B*27 | Irish | 15 | |||
| B*57 | Baltimore | Baltimore | 17 | ||
| Cw*01 | Irish | Baltimore | 15, 17 | ||
| Cw*05 | Chicago | Chicago | Chicago | Present | |
| DRB1*01 | Irish | Baltimore, Chicago | 15, 17, present | ||
| DRB1*11 | British, Italian | Philadelphia | 14, 16, 19 | ||
| DRB1*12 | Chicago | Chicago | Present | ||
| DQB1*03 | British | Philadelphia | Baltimore | 14, 18, 19 | |
| Chicago | Chicago | Present | |||
| DQB1*05 | Irish | Baltimore, Chicago | 15, 18, 19 | ||
| A*02 | Chicago | Present | |||
| A*23 | Baltimore | 17 | |||
| Cw*04 | Baltimore | Baltimore | 17 | ||
| DRB1*03 | Irish, German | Baltimore | 15, 18, 20 | ||
| DRB1*07 | British | Chicago | 19, present | ||
| DRB1*12 | Chicago | Present | |||
| DQB1*02 | Irish | Baltimore, Chicago | 15, 17, present | ||
*: All Americans are injection drug users; AA: African American; HL: Hispanic Latino American. **: Irish females. Sample size (n): Irish: 227; British: 250; Baltimore:548/675; Chicago: 105; Philadelphia: 93; German: 75; and Italian: 73.