Literature DB >> 19408032

Owner controlled data exchange in nutrigenomic collaborations: the NuGO information network.

Ulrich Harttig1, Anthony J Travis, Philippe Rocca-Serra, Marten Renkema, Ben van Ommen, Heiner Boeing.   

Abstract

New 'omics' technologies are changing nutritional sciences research. They enable to tackle increasingly complex questions but also increase the need for collaboration between research groups. An important challenge for successful collaboration is the management and structured exchange of information that accompanies data-intense technologies. NuGO, the European Nutrigenomics Organization, the major collaborating network in molecular nutritional sciences, is supporting the application of modern information technologies in this area. We have developed and implemented a concept for data management and computing infrastructure that supports collaboration between nutrigenomics researchers. The system fills the gap between "private" storing with occasional file sharing by email and the use of centralized databases. It provides flexible tools to share data, also during experiments, while preserving ownership. The NuGO Information Network is a decentral, distributed system for data exchange based on standard web technology. Secure access to data, maintained by the individual researcher, is enabled by web services based on the the BioMoby framework. A central directory provides information about available web services. The flexibility of the infrastructure allows a wide variety of services for data processing and integration by combining several web services, including public services. Therefore, this integrated information system is suited for other research collaborations.

Year:  2009        PMID: 19408032      PMCID: PMC2690731          DOI: 10.1007/s12263-009-0123-8

Source DB:  PubMed          Journal:  Genes Nutr        ISSN: 1555-8932            Impact factor:   5.523


  34 in total

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Authors:  M Kanehisa; S Goto
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  The generic genome browser: a building block for a model organism system database.

Authors:  Lincoln D Stein; Christopher Mungall; ShengQiang Shu; Michael Caudy; Marco Mangone; Allen Day; Elizabeth Nickerson; Jason E Stajich; Todd W Harris; Adrian Arva; Suzanna Lewis
Journal:  Genome Res       Date:  2002-10       Impact factor: 9.043

Review 4.  Nutrigenomics: the impact of biomics technology on nutrition research.

Authors:  Irène Corthésy-Theulaz; Johan T den Dunnen; Pascal Ferré; Jan M W Geurts; Michael Müller; Nico van Belzen; Ben van Ommen
Journal:  Ann Nutr Metab       Date:  2005-09-21       Impact factor: 3.374

Review 5.  Nutrigenomics and nutrigenetics: the 'omics' revolution in nutritional science.

Authors:  Edwin C M Mariman
Journal:  Biotechnol Appl Biochem       Date:  2006-06       Impact factor: 2.431

Review 6.  Building the bridges to bioinformatics in nutrition research.

Authors:  Danielle G Lemay; Angela M Zivkovic; J Bruce German
Journal:  Am J Clin Nutr       Date:  2007-11       Impact factor: 7.045

7.  A physical map of the human genome.

Authors:  J D McPherson; M Marra; L Hillier; R H Waterston; A Chinwalla; J Wallis; M Sekhon; K Wylie; E R Mardis; R K Wilson; R Fulton; T A Kucaba; C Wagner-McPherson; W B Barbazuk; S G Gregory; S J Humphray; L French; R S Evans; G Bethel; A Whittaker; J L Holden; O T McCann; A Dunham; C Soderlund; C E Scott; D R Bentley; G Schuler; H C Chen; W Jang; E D Green; J R Idol; V V Maduro; K T Montgomery; E Lee; A Miller; S Emerling; R Gibbs; S Scherer; J H Gorrell; E Sodergren; K Clerc-Blankenburg; P Tabor; S Naylor; D Garcia; P J de Jong; J J Catanese; N Nowak; K Osoegawa; S Qin; L Rowen; A Madan; M Dors; L Hood; B Trask; C Friedman; H Massa; V G Cheung; I R Kirsch; T Reid; R Yonescu; J Weissenbach; T Bruls; R Heilig; E Branscomb; A Olsen; N Doggett; J F Cheng; T Hawkins; R M Myers; J Shang; L Ramirez; J Schmutz; O Velasquez; K Dixon; N E Stone; D R Cox; D Haussler; W J Kent; T Furey; S Rogic; S Kennedy; S Jones; A Rosenthal; G Wen; M Schilhabel; G Gloeckner; G Nyakatura; R Siebert; B Schlegelberger; J Korenberg; X N Chen; A Fujiyama; M Hattori; A Toyoda; T Yada; H S Park; Y Sakaki; N Shimizu; S Asakawa; K Kawasaki; T Sasaki; A Shintani; A Shimizu; K Shibuya; J Kudoh; S Minoshima; J Ramser; P Seranski; C Hoff; A Poustka; R Reinhardt; H Lehrach
Journal:  Nature       Date:  2001-02-15       Impact factor: 49.962

8.  Facilities and methods for the high-throughput crystal structural analysis of human proteins.

Authors:  Udo Heinemann; Konrad Büssow; Uwe Mueller; Patrick Umbach
Journal:  Acc Chem Res       Date:  2003-03       Impact factor: 22.384

9.  BioArray Software Environment (BASE): a platform for comprehensive management and analysis of microarray data.

Authors:  Lao H Saal; Carl Troein; Johan Vallon-Christersson; Sofia Gruvberger; Ake Borg; Carsten Peterson
Journal:  Genome Biol       Date:  2002-07-15       Impact factor: 13.583

10.  A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB.

Authors:  Tim F Rayner; Philippe Rocca-Serra; Paul T Spellman; Helen C Causton; Anna Farne; Ele Holloway; Rafael A Irizarry; Junmin Liu; Donald S Maier; Michael Miller; Kjell Petersen; John Quackenbush; Gavin Sherlock; Christian J Stoeckert; Joseph White; Patricia L Whetzel; Farrell Wymore; Helen Parkinson; Ugis Sarkans; Catherine A Ball; Alvis Brazma
Journal:  BMC Bioinformatics       Date:  2006-11-06       Impact factor: 3.169

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  2 in total

1.  A genome-wide survey for SNPs altering microRNA seed sites identifies functional candidates in GWAS.

Authors:  Kris Richardson; Chao-Qiang Lai; Laurence D Parnell; Yu-Chi Lee; Jose M Ordovas
Journal:  BMC Genomics       Date:  2011-10-13       Impact factor: 3.969

2.  Challenges of molecular nutrition research 6: the nutritional phenotype database to store, share and evaluate nutritional systems biology studies.

Authors:  Ben van Ommen; Jildau Bouwman; Lars O Dragsted; Christian A Drevon; Ruan Elliott; Philip de Groot; Jim Kaput; John C Mathers; Michael Müller; Fre Pepping; Jahn Saito; Augustin Scalbert; Marijana Radonjic; Philippe Rocca-Serra; Anthony Travis; Suzan Wopereis; Chris T Evelo
Journal:  Genes Nutr       Date:  2010-02-03       Impact factor: 5.523

  2 in total

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