Literature DB >> 19407386

Preliminary joint neutron and X-ray crystallographic study of human carbonic anhydrase II.

S Z Fisher1, A Y Kovalevsky, J F Domsic, M Mustyakimov, D N Silverman, R McKenna, Paul Langan.   

Abstract

Carbonic anhydrases catalyze the interconversion of CO(2) to HCO(3)(-), with a subsequent proton-transfer (PT) step. PT proceeds via a proposed hydrogen-bonded water network in the active-site cavity that is stabilized by several hydrophilic residues. A joint X-ray and neutron crystallographic study has been initiated to determine the specific water network and the protonation states of the hydrophilic residues that coordinate it in human carbonic anhydrase II. Time-of-flight neutron crystallographic data have been collected from a large ( approximately 1.2 mm(3)) hydrogen/deuterium-exchanged crystal to 2.4 A resolution and X-ray crystallographic data have been collected from a similar but smaller crystal to 1.5 A resolution. Obtaining good-quality neutron data will contribute to the understanding of the catalytic mechanisms that utilize water networks for PT in protein environments.

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Year:  2009        PMID: 19407386      PMCID: PMC2675594          DOI: 10.1107/S1744309109013086

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  25 in total

1.  Solvent-mediated proton transfer in catalysis by carbonic anhydrase.

Authors:  David N Silverman; Robert McKenna
Journal:  Acc Chem Res       Date:  2007-06-06       Impact factor: 22.384

2.  Quantum model of catalysis based on a mobile proton revealed by subatomic x-ray and neutron diffraction studies of h-aldose reductase.

Authors:  Matthew P Blakeley; Federico Ruiz; Raul Cachau; Isabelle Hazemann; Flora Meilleur; Andre Mitschler; Stephan Ginell; Pavel Afonine; Oscar N Ventura; Alexandra Cousido-Siah; Michael Haertlein; Andrzej Joachimiak; Dean Myles; Alberto Podjarny
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-04       Impact factor: 11.205

3.  On the determinants of amide backbone exchange in proteins: a neutron crystallographic comparative study.

Authors:  Brad C Bennett; Anna S Gardberg; Matthew D Blair; Chris G Dealwis
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2008-06-18

4.  Structural and kinetic characterization of active-site histidine as a proton shuttle in catalysis by human carbonic anhydrase II.

Authors:  Zoë Fisher; Jose A Hernandez Prada; Chingkuang Tu; David Duda; Craig Yoshioka; Haiqian An; Lakshmanan Govindasamy; David N Silverman; Robert McKenna
Journal:  Biochemistry       Date:  2005-02-01       Impact factor: 3.162

5.  Entrapment of carbon dioxide in the active site of carbonic anhydrase II.

Authors:  John F Domsic; Balendu Sankara Avvaru; Chae Un Kim; Sol M Gruner; Mavis Agbandje-McKenna; David N Silverman; Robert McKenna
Journal:  J Biol Chem       Date:  2008-09-02       Impact factor: 5.157

6.  Neutron and X-ray structural studies of short hydrogen bonds in photoactive yellow protein (PYP).

Authors:  S Z Fisher; S Anderson; R Henning; K Moffat; P Langan; P Thiyagarajan; A J Schultz
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-10-17

7.  Rapid determination of hydrogen positions and protonation states of diisopropyl fluorophosphatase by joint neutron and X-ray diffraction refinement.

Authors:  Marc-Michael Blum; Marat Mustyakimov; Heinz Rüterjans; Kai Kehe; Benno P Schoenborn; Paul Langan; Julian C-H Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-09       Impact factor: 11.205

Review 8.  Neutron crystallography: opportunities, challenges, and limitations.

Authors:  Matthew P Blakeley; Paul Langan; Nobuo Niimura; Alberto Podjarny
Journal:  Curr Opin Struct Biol       Date:  2008-08-07       Impact factor: 6.809

9.  Hydrogen/deuterium exchange mass spectrometry.

Authors:  Xuguang Yan; Claudia S Maier
Journal:  Methods Mol Biol       Date:  2009

Review 10.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14
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  8 in total

1.  Kinetic and structural characterization of thermostabilized mutants of human carbonic anhydrase II.

Authors:  Zoë Fisher; Christopher D Boone; Shya Masri Biswas; Balasubramanian Venkatakrishnan; Mayank Aggarwal; Chingkuang Tu; Mavis Agbandje-McKenna; David Silverman; Robert McKenna
Journal:  Protein Eng Des Sel       Date:  2012-06-12       Impact factor: 1.650

2.  Preliminary neutron and X-ray crystallographic studies of equine cyanomethemoglobin.

Authors:  A Y Kovalevsky; S Zoe Fisher; Sean Seaver; Marat Mustyakimov; Narayanasami Sukumar; Paul Langan; Timothy C Mueser; B Leif Hanson
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-03-31

3.  Hemoglobin redux: combining neutron and X-ray diffraction with mass spectrometry to analyse the quaternary state of oxidized hemoglobins.

Authors:  Timothy C Mueser; Wendell P Griffith; Andrey Y Kovalevsky; Jingshu Guo; Sean Seaver; Paul Langan; B Leif Hanson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-10-20

4.  Enzymes for carbon sequestration: neutron crystallographic studies of carbonic anhydrase.

Authors:  S Z Fisher; A Y Kovalevsky; J Domsic; M Mustyakimov; D N Silverman; R McKenna; P Langan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-10-20

5.  Macromolecular neutron crystallography at the Protein Crystallography Station (PCS).

Authors:  Andrey Kovalevsky; Zoe Fisher; Hannah Johnson; Marat Mustyakimov; Mary Jo Waltman; Paul Langan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-10-20

6.  Neutron structure of human carbonic anhydrase II: implications for proton transfer.

Authors:  S Zoë Fisher; Andrey Y Kovalevsky; John F Domsic; Marat Mustyakimov; Robert McKenna; David N Silverman; Paul A Langan
Journal:  Biochemistry       Date:  2010-01-26       Impact factor: 3.162

7.  Preliminary time-of-flight neutron diffraction studies of Escherichia coli ABC transport receptor phosphate-binding protein at the Protein Crystallography Station.

Authors:  K H Sippel; J Bacik; F A Quiocho; S Z Fisher
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-05-25       Impact factor: 1.056

8.  FragMAX: the fragment-screening platform at the MAX IV Laboratory.

Authors:  Gustavo M A Lima; Vladimir O Talibov; Elmir Jagudin; Céleste Sele; Maria Nyblom; Wolfgang Knecht; Derek T Logan; Tove Sjögren; Uwe Mueller
Journal:  Acta Crystallogr D Struct Biol       Date:  2020-07-27       Impact factor: 7.652

  8 in total

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