Literature DB >> 15667203

Structural and kinetic characterization of active-site histidine as a proton shuttle in catalysis by human carbonic anhydrase II.

Zoë Fisher1, Jose A Hernandez Prada, Chingkuang Tu, David Duda, Craig Yoshioka, Haiqian An, Lakshmanan Govindasamy, David N Silverman, Robert McKenna.   

Abstract

In the catalysis of the hydration of carbon dioxide and dehydration of bicarbonate by human carbonic anhydrase II (HCA II), a histidine residue (His64) shuttles protons between the zinc-bound solvent molecule and the bulk solution. To evaluate the effect of the position of the shuttle histidine and pH on proton shuttling, we have examined the catalysis and crystal structures of wild-type HCA II and two double mutants: H64A/N62H and H64A/N67H HCA II. His62 and His67 both have their side chains extending into the active-site cavity with distances from the zinc approximately equivalent to that of His64. Crystal structures were determined at pH 5.1-10.0, and the catalysis of the exchange of (18)O between CO(2) and water was assessed by mass spectrometry. Efficient proton shuttle exceeding a rate of 10(5) s(-)(1) was observed for histidine at positions 64 and 67; in contrast, relatively inefficient proton transfer at a rate near 10(3) s(-)(1) was observed for His62. The observation, in the crystal structures, of a completed hydrogen-bonded water chain between the histidine shuttle residue and the zinc-bound solvent does not appear to be required for efficient proton transfer. The data suggest that the number of intervening water molecules between the donor and acceptor supporting efficient proton transfer in HCA II is important, and furthermore suggest that a water bridge consisting of two intervening water molecules is consistent with efficient proton transfer.

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Year:  2005        PMID: 15667203     DOI: 10.1021/bi0480279

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  55 in total

1.  Kinetic and structural characterization of thermostabilized mutants of human carbonic anhydrase II.

Authors:  Zoë Fisher; Christopher D Boone; Shya Masri Biswas; Balasubramanian Venkatakrishnan; Mayank Aggarwal; Chingkuang Tu; Mavis Agbandje-McKenna; David Silverman; Robert McKenna
Journal:  Protein Eng Des Sel       Date:  2012-06-12       Impact factor: 1.650

2.  "Proton holes" in long-range proton transfer reactions in solution and enzymes: A theoretical analysis.

Authors:  Demian Riccardi; Peter König; Xavier Prat-Resina; Haibo Yu; Marcus Elstner; Thomas Frauenheim; Qiang Cui
Journal:  J Am Chem Soc       Date:  2006-12-20       Impact factor: 15.419

3.  Toward theoretical analysis of long-range proton transfer kinetics in biomolecular pumps.

Authors:  P H König; N Ghosh; M Hoffmann; M Elstner; E Tajkhorshid; Th Frauenheim; Q Cui
Journal:  J Phys Chem A       Date:  2006-01-19       Impact factor: 2.781

Review 4.  Carbonic anhydrase as a model for biophysical and physical-organic studies of proteins and protein-ligand binding.

Authors:  Vijay M Krishnamurthy; George K Kaufman; Adam R Urbach; Irina Gitlin; Katherine L Gudiksen; Douglas B Weibel; George M Whitesides
Journal:  Chem Rev       Date:  2008-03       Impact factor: 60.622

5.  Joint neutron crystallographic and NMR solution studies of Tyr residue ionization and hydrogen bonding: Implications for enzyme-mediated proton transfer.

Authors:  Ryszard Michalczyk; Clifford J Unkefer; John-Paul Bacik; Tobias E Schrader; Andreas Ostermann; Andrey Y Kovalevsky; Robert McKenna; Suzanne Zoë Fisher
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-20       Impact factor: 11.205

6.  Enzymes for carbon sequestration: neutron crystallographic studies of carbonic anhydrase.

Authors:  S Z Fisher; A Y Kovalevsky; J Domsic; M Mustyakimov; D N Silverman; R McKenna; P Langan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-10-20

7.  Modeling the structure and proton transfer pathways of the mutant His-107-Tyr of human carbonic anhydrase II.

Authors:  Puspita Halder; Srabani Taraphder
Journal:  J Mol Model       Date:  2012-08-10       Impact factor: 1.810

8.  Design of a carbonic anhydrase IX active-site mimic to screen inhibitors for possible anticancer properties.

Authors:  Caroli Genis; Katherine H Sippel; Nicolette Case; Wengang Cao; Balendu Sankara Avvaru; Lawrence J Tartaglia; Lakshmanan Govindasamy; Chingkuang Tu; Mavis Agbandje-McKenna; David N Silverman; Charles J Rosser; Robert McKenna
Journal:  Biochemistry       Date:  2009-02-17       Impact factor: 3.162

9.  Location of binding sites in small molecule rescue of human carbonic anhydrase II.

Authors:  Deepa Bhatt; S Zoë Fisher; Chingkuang Tu; Robert McKenna; David N Silverman
Journal:  Biophys J       Date:  2006-10-27       Impact factor: 4.033

10.  Origins of enhanced proton transport in the Y7F mutant of human carbonic anhydrase II.

Authors:  C Mark Maupin; Marissa G Saunders; Ian F Thorpe; Robert McKenna; David N Silverman; Gregory A Voth
Journal:  J Am Chem Soc       Date:  2008-07-31       Impact factor: 15.419

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