Literature DB >> 19404435

Pulsing cells: how fast is too fast?

Saurabh Paliwal1, C Joanne Wang, Andre Levchenko.   

Abstract

Signal transduction pathways are complex coupled sets of biochemical reactions evolved to transmit and process information about the state of the immediate cell environment. Can we design experiments that would inform us about the properties and limitations of signal processing? Recent studies suggest that this indeed can be achieved by exciting a cell with carefully designed oscillatory stimuli. Although this analysis has its caveats, complex temporal stimulation of signal transduction networks can serve to rapidly advance our understanding of these information channels and ultimately create intelligent ways of controlling them.

Year:  2008        PMID: 19404435      PMCID: PMC2639942          DOI: 10.2976/1.2969901

Source DB:  PubMed          Journal:  HFSP J        ISSN: 1955-205X


  28 in total

Review 1.  Soft lithography in biology and biochemistry.

Authors:  G M Whitesides; E Ostuni; S Takayama; X Jiang; D E Ingber
Journal:  Annu Rev Biomed Eng       Date:  2001       Impact factor: 9.590

2.  Computational modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptors.

Authors:  Birgit Schoeberl; Claudia Eichler-Jonsson; Ernst Dieter Gilles; Gertraud Müller
Journal:  Nat Biotechnol       Date:  2002-04       Impact factor: 54.908

3.  Integrative model of the response of yeast to osmotic shock.

Authors:  Edda Klipp; Bodil Nordlander; Roland Krüger; Peter Gennemark; Stefan Hohmann
Journal:  Nat Biotechnol       Date:  2005-07-17       Impact factor: 54.908

4.  A microfluidic chemostat for experiments with bacterial and yeast cells.

Authors:  Alex Groisman; Caroline Lobo; HoJung Cho; J Kyle Campbell; Yann S Dufour; Ann M Stevens; Andre Levchenko
Journal:  Nat Methods       Date:  2005-09       Impact factor: 28.547

5.  Mathematical and computational analysis of adaptation via feedback inhibition in signal transduction pathways.

Authors:  Marcelo Behar; Nan Hao; Henrik G Dohlman; Timothy C Elston
Journal:  Biophys J       Date:  2007-05-18       Impact factor: 4.033

Review 6.  Cell-signalling dynamics in time and space.

Authors:  Boris N Kholodenko
Journal:  Nat Rev Mol Cell Biol       Date:  2006-03       Impact factor: 94.444

7.  Signal processing by the HOG MAP kinase pathway.

Authors:  Pascal Hersen; Megan N McClean; L Mahadevan; Sharad Ramanathan
Journal:  Proc Natl Acad Sci U S A       Date:  2008-05-14       Impact factor: 11.205

Review 8.  Regulation of the osmoregulatory HOG MAPK cascade in yeast.

Authors:  Haruo Saito; Kazuo Tatebayashi
Journal:  J Biochem       Date:  2004-09       Impact factor: 3.387

Review 9.  Engineered gene circuits.

Authors:  Jeff Hasty; David McMillen; J J Collins
Journal:  Nature       Date:  2002-11-14       Impact factor: 49.962

10.  A microfluidics-based turning assay reveals complex growth cone responses to integrated gradients of substrate-bound ECM molecules and diffusible guidance cues.

Authors:  C Joanne Wang; Xiong Li; Benjamin Lin; Sangwoo Shim; Guo-Li Ming; Andre Levchenko
Journal:  Lab Chip       Date:  2008-01-04       Impact factor: 6.799

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  5 in total

Review 1.  Oscillatory signaling processes: the how, the why and the where.

Authors:  Raymond Cheong; Andre Levchenko
Journal:  Curr Opin Genet Dev       Date:  2010-12       Impact factor: 5.578

Review 2.  Adaptive molecular networks controlling chemotactic migration: dynamic inputs and selection of the network architecture.

Authors:  Hao Chang; Andre Levchenko
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-09-23       Impact factor: 6.237

3.  Band-pass processing in a GPCR signaling pathway selects for NFAT transcription factor activation.

Authors:  M Sumit; R R Neubig; S Takayama; J J Linderman
Journal:  Integr Biol (Camb)       Date:  2015-11       Impact factor: 2.192

Review 4.  How to train your microbe: methods for dynamically characterizing gene networks.

Authors:  Sebastian M Castillo-Hair; Oleg A Igoshin; Jeffrey J Tabor
Journal:  Curr Opin Microbiol       Date:  2015-02-10       Impact factor: 7.934

5.  The Dynamical Systems Properties of the HOG Signaling Cascade.

Authors:  Agnès Miermont; Jannis Uhlendorf; Megan McClean; Pascal Hersen
Journal:  J Signal Transduct       Date:  2011-02-07
  5 in total

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