| Literature DB >> 19402960 |
Etienne Ruppé1, Sopheak Hem, Sovannarith Lath, Valérie Gautier, Frédéric Ariey, Jean-Louis Sarthou, Didier Monchy, Guillaume Arlet.
Abstract
Despite the recent global spread of CTX-M beta-lactamases in Escherichia coli isolates from community-acquired urinary tract infections (CA-UTIs), their dissemination has been little studied in developing countries. In a 2-year prospective study, we documented the prevalence of extended-spectrum beta-lactamases (ESBLs) in E. coli that were responsible for CA-UTIs in Phnom-Penh, Cambodia. Ninety-three E. coli strains were included. We observed a high prevalence of resistance to amoxicillin (88.2% of strains), cotrimoxazole (75.3%), ciprofloxacin (67.7%), gentamicin (42.5%), and third-generation cephalosporins (37.7%). A total of 34 strains carried ESBLs, all of which were CTX-M type. CTX-M carriage was associated with resistance to fluoroquinolones and aminoglycosides. U using repetitive extragenic palindromic-PCR, we identified 4 clusters containing 9, 8, 3, and 2 strains. The prevalence of CTX-M beta-lactamases has reached a critical level in Cambodia, which highlights the need for study of their spread in developing countries.Entities:
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Year: 2009 PMID: 19402960 PMCID: PMC2687024 DOI: 10.3201/eid1505.071299
Source DB: PubMed Journal: Emerg Infect Dis ISSN: 1080-6040 Impact factor: 6.883
Primers used to study CTX-M β-lactamases in Escherichia coli, Cambodia, 2004–2005
| Gene detected | Primer name | Primer sequence (5′ → 3′) | Reference |
|---|---|---|---|
|
| C | TCG GGG AAA TGT GCG CG | ( |
|
| D | TGC TTA ATC AGT GAG GCA CC | |
|
| OS-5 | TTA TCT CCC TGT TAG CCA CC | ( |
|
| OS-6 | GAT TTG CTG ATT TCG CTC GG | |
|
| MA-1 | SCS ATG TGC AGY ACC AGT AA | ( |
|
| MA-2 | CCG CRA TAT GRT TGG TGG TG | |
| M9U | ATG GTG ACA AAG AGA GTG CA | ( | |
|
| M9L | CCC TTC GGC GAT GAT TCT C | |
| M13U | GGT TAA AAA ATC ACT GCG TC | ( | |
|
| M13L | TTG GTG ACG ATT TTA GCC GC | |
|
| AmpC1 | AAT GGG TTT TCT ACG GTC TG | ( |
|
| AmpC2 | GGG CAG CAA ATG TGG AGC AA | |
|
| casF | CGA CTT CCA TTT CCC GAT GC | ( |
|
| casB | GGA CTC TGC AAC AAA TAC GC | |
|
| OXA-1up | TAT CAA CTT CGC TAT TTT TTT A | ( |
|
| OXA-1low | TTT AGT GTG TTT AGA ATG GTG A | |
|
| CF1 | ATGATGAAAAAATCGTTATGC | ( |
|
| CF2 | TTGTAGCTTTTCAAGAATGCGC | |
|
| ChuA.1 | GAC GAA CCA ACG GTC AGG AT | ( |
|
| ChuA.2 | TGC CGC CAG TAC CAA AGA CA | |
|
| YgaA.1 | TGA AGT GTC AGG AGA CGC TG | ( |
|
| YgaA.2 | ATG GAG AAT GGG TTC CTC AAC | |
|
| TspE4C2.1 | GAG TAA TGT CGG GGC ATT CA | ( |
| TspE4C2.2 | CGC GCC AAC AAA GTA TTA GC |
FigureResults of repetitive extragenic palindromic–PCR of Escherichia coli isolates belonging to the 4 clusters, Cambodia, 2004–2005. CEC, Cambodian E. coli.
Resistance to antimicrobial agents among ESBL-positive and ESBL-negative Escherichia coli, Cambodia, 2004–2005*
| Antimicrobial agent | Resistance ratios, % (no. resistant strains) | p value | ||
|---|---|---|---|---|
| ESBL+, n = 34 | ESBL–, n = 59 | Total, n = 93 | ||
| Fluoroquinolones | 94 (32) | 53 (31) | 68 (63) | <0.001 |
| Cotrimoxazole | 85 (29) | 69 (41) | 75 (70) | 0.06 |
| Aminoglycosides | 65 (22) | 27 (16) | 42 (39) | <0.01 |
| Co-amoxiclav | 94 (32) | 19 (11) | 46 (43) | <0.001 |
| Cefoxitin | 41 (13) | 11 (7) | 22 (20) | <0.001 |
| Nitrofurantoin | 0 | 0 | 0 | NS |
| Fosfomycin | 0 | 0 | 0 | NS |
*ESBL, extended-spectrum β-lactamase; NS, not significant.
Mutations detected in the ampC promoter region of CTX-M β-lactam–resistant Escherichia coli*
| Isolate | CEF MIC, mg/L | CTX-M | Phylogenetic group | Mutation at position† | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| −42 | −32 | −28 | −18 | −1 | +22 | +26 | +27 | +32 | +58 | +70 | +81 | ||||
| – | – | – | C | T | G | G | C | C | T | A | G | C | C | G | |
| CEC1 | 16 | Yes | D | T | G | T | A | T | |||||||
| CEC3 | 32 | No | D | T | G | T | A | T | |||||||
| CEC4 | 32 | No | D | A | T | T | |||||||||
| CEC6 | 32 | Yes | D | T | G | T | A | T | |||||||
| CEC8 | 32 | Yes | D | T | G | T | A | T | |||||||
| CEC9 | 32 | Yes | D | T | G | T | A | T | |||||||
| CEC10 | 32 | Yes | D | T | G | T | A | T | |||||||
| CEC13 | 32 | Yes | D | T | G | T | A | T | |||||||
| CEC14 | 16 | Yes | D | T | |||||||||||
| CEC15 | 16 | Yes | D | T | |||||||||||
| CEC19 | 32 | No | D | T | G | T | A | T | |||||||
| CEC21 | 16 | Yes | D | A | T | A | |||||||||
| CEC22 | 16 | Yes | D | T | |||||||||||
| CEC31 | 16 | Yes | D | A | T | A | |||||||||
| CEC57 | 32 | No | D | A | T | G | T | A | T | ||||||
| CEC88 | 32 | No | B2 | A | A | ||||||||||
| CEC89 | 32 | Yes | D | T | G | T | A | T | |||||||
| CEC92 | >128 | Yes | D | T | A | T | T | ||||||||
| CEC93 | >128 | No | D | T | G | T | A | T | |||||||
*CEF, cefoxitin; CEC, Cambodian E. coli. †According to numbering of Jaurin and Grundström ().