Literature DB >> 19399371

Optimized bacterial expression and purification of the c-Src catalytic domain for solution NMR studies.

Andrea Piserchio1, Ranajeet Ghose, David Cowburn.   

Abstract

Progression of a host of human cancers is associated with elevated levels of expression and catalytic activity of the Src family of tyrosine kinases (SFKs), making them key therapeutic targets. Even with the availability of multiple crystal structures of active and inactive forms of the SFK catalytic domain (CD), a complete understanding of its catalytic regulation is unavailable. Also unavailable are atomic or near-atomic resolution information about their interactions, often weak or transient, with regulating phosphatases and downstream targets. Solution NMR, the biophysical method best suited to tackle this problem, was previously hindered by difficulties in bacterial expression and purification of sufficient quantities of soluble, properly folded protein for economically viable labeling with NMR-active isotopes. Through a choice of optimal constructs, co-expression with chaperones and optimization of the purification protocol, we have achieved the ability to bacterially produce large quantities of the isotopically-labeled CD of c-Src, the prototypical SFK, and of its activating Tyr-phosphorylated form. All constructs produce excellent spectra allowing solution NMR studies of this family in an efficient manner.

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Year:  2009        PMID: 19399371      PMCID: PMC2735562          DOI: 10.1007/s10858-009-9318-y

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  41 in total

Review 1.  Impact of transverse relaxation optimized spectroscopy (TROSY) on NMR as a technique in structural biology.

Authors:  K Pervushin
Journal:  Q Rev Biophys       Date:  2000-05       Impact factor: 5.318

2.  Dynamic coupling between the SH2 and SH3 domains of c-Src and Hck underlies their inactivation by C-terminal tyrosine phosphorylation.

Authors:  M A Young; S Gonfloni; G Superti-Furga; B Roux; J Kuriyan
Journal:  Cell       Date:  2001-04-06       Impact factor: 41.582

3.  Protein dynamics measurements by TROSY-based NMR experiments.

Authors:  G Zhu; Y Xia; L K Nicholson; K H Sze
Journal:  J Magn Reson       Date:  2000-04       Impact factor: 2.229

Review 4.  Mapping protein-protein interactions in solution by NMR spectroscopy.

Authors:  Erik R P Zuiderweg
Journal:  Biochemistry       Date:  2002-01-08       Impact factor: 3.162

5.  A solubility-enhancement tag (SET) for NMR studies of poorly behaving proteins.

Authors:  P Zhou; A A Lugovskoy; G Wagner
Journal:  J Biomol NMR       Date:  2001-05       Impact factor: 2.835

6.  MBP fusion protein with a viral protease cleavage site: one-step cleavage/purification of insoluble proteins.

Authors:  A Alexandrov; K Dutta; S M Pascal
Journal:  Biotechniques       Date:  2001-06       Impact factor: 1.993

7.  Molecular determinants for Csk-catalyzed tyrosine phosphorylation of the Src tail.

Authors:  D Wang; X Y Huang; P A Cole
Journal:  Biochemistry       Date:  2001-02-20       Impact factor: 3.162

Review 8.  The hunting of the Src.

Authors:  G S Martin
Journal:  Nat Rev Mol Cell Biol       Date:  2001-06       Impact factor: 94.444

Review 9.  NMR-based screening methods for lead discovery.

Authors:  Martin Vogtherr; Klaus Fiebig
Journal:  EXS       Date:  2003

10.  Solution conformations and dynamics of ABL kinase-inhibitor complexes determined by NMR substantiate the different binding modes of imatinib/nilotinib and dasatinib.

Authors:  Navratna Vajpai; André Strauss; Gabriele Fendrich; Sandra W Cowan-Jacob; Paul W Manley; Stephan Grzesiek; Wolfgang Jahnke
Journal:  J Biol Chem       Date:  2008-04-22       Impact factor: 5.157

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  3 in total

1.  Expression and purification of Src-family kinases for solution NMR studies.

Authors:  Andrea Piserchio; David Cowburn; Ranajeet Ghose
Journal:  Methods Mol Biol       Date:  2012

2.  Substrate binding to Src: A new perspective on tyrosine kinase substrate recognition from NMR and molecular dynamics.

Authors:  Mehul K Joshi; Robert A Burton; Heng Wu; Andrew M Lipchik; Barbara P Craddock; Huaping Mo; Laurie L Parker; W Todd Miller; Carol Beth Post
Journal:  Protein Sci       Date:  2019-11-21       Impact factor: 6.725

Review 3.  Strategies to optimize protein expression in E. coli.

Authors:  Dana M Francis; Rebecca Page
Journal:  Curr Protoc Protein Sci       Date:  2010-08
  3 in total

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