Literature DB >> 19396366

Splicing of mRNA precursors: the role of RNAs and proteins in catalysis.

Chaim Wachtel1, James L Manley.   

Abstract

Splicing of mRNA precursors was discovered over 30 years ago. It is one of the most complex steps in gene expression and therefore must be tightly controlled to ensure that splicing occurs efficiently and accurately. Splicing takes place in a large complex, the spliceosome, which contains approximately 200 proteins and five small RNAs (U snRNAs). Since its discovery, much work has been done to elucidate the pathway of the chemical reaction as well as the proteins and RNAs involved in catalysis. A variety of studies have established the potential for U2 and U6 snRNAs to play a role in splicing catalysis, raising the possibility that the spliceosome is a ribozyme. If correct, this would point to the spliceosomal proteins playing a supporting role during splicing. On the other hand, it may be that proteins contribute more directly to the spliceosomal active site, with the highly evolutionarily conserved Prp8 protein being an excellent candidate. This review will concentrate on recent work on splicing catalysis, and on elucidating the possible roles proteins play in this process.

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Year:  2009        PMID: 19396366      PMCID: PMC3724451          DOI: 10.1039/b820828j

Source DB:  PubMed          Journal:  Mol Biosyst        ISSN: 1742-2051


  61 in total

1.  A ribozyme selected from variants of U6 snRNA promotes 2',5'-branch formation.

Authors:  T Tuschl; P A Sharp; D P Bartel
Journal:  RNA       Date:  2001-01       Impact factor: 4.942

Review 2.  Allosteric cascade of spliceosome activation.

Authors:  David A Brow
Journal:  Annu Rev Genet       Date:  2002-06-11       Impact factor: 16.830

3.  Characterization of the catalytic activity of U2 and U6 snRNAs.

Authors:  Saba Valadkhan; James L Manley
Journal:  RNA       Date:  2003-07       Impact factor: 4.942

Review 4.  Non-traditional functions of ubiquitin and ubiquitin-binding proteins.

Authors:  Joshua D Schnell; Linda Hicke
Journal:  J Biol Chem       Date:  2003-07-14       Impact factor: 5.157

5.  Comprehensive proteomic analysis of the human spliceosome.

Authors:  Zhaolan Zhou; Lawrence J Licklider; Steven P Gygi; Robin Reed
Journal:  Nature       Date:  2002-09-12       Impact factor: 49.962

6.  Large-scale proteomic analysis of the human spliceosome.

Authors:  Juri Rappsilber; Ursula Ryder; Angus I Lamond; Matthias Mann
Journal:  Genome Res       Date:  2002-08       Impact factor: 9.043

7.  The Prp19p-associated complex in spliceosome activation.

Authors:  Shih-Peng Chan; Der-I Kao; Wei-Yü Tsai; Soo-Chen Cheng
Journal:  Science       Date:  2003-09-11       Impact factor: 47.728

8.  Structural elucidation of a PRP8 core domain from the heart of the spliceosome.

Authors:  Dustin B Ritchie; Matthew J Schellenberg; Emily M Gesner; Sheetal A Raithatha; David T Stuart; Andrew M Macmillan
Journal:  Nat Struct Mol Biol       Date:  2008-10-02       Impact factor: 15.369

9.  Metal binding and base ionization in the U6 RNA intramolecular stem-loop structure.

Authors:  Anna Huppler; Laura J Nikstad; Anne M Allmann; David A Brow; Samuel E Butcher
Journal:  Nat Struct Biol       Date:  2002-06

Review 10.  The spliceosome: the most complex macromolecular machine in the cell?

Authors:  Timothy W Nilsen
Journal:  Bioessays       Date:  2003-12       Impact factor: 4.345

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  15 in total

Review 1.  Defects in spliceosomal machinery: a new pathway of leukaemogenesis.

Authors:  Jaroslaw P Maciejewski; Richard A Padgett
Journal:  Br J Haematol       Date:  2012-05-18       Impact factor: 6.998

2.  Rapid cross-linking of an RNA internal loop by the anticancer drug cisplatin.

Authors:  Alethia A Hostetter; Erich G Chapman; Victoria J DeRose
Journal:  J Am Chem Soc       Date:  2009-07-08       Impact factor: 15.419

Review 3.  Model systems: how chemical biologists study RNA.

Authors:  Andro C Rios; Yitzhak Tor
Journal:  Curr Opin Chem Biol       Date:  2009-10-29       Impact factor: 8.822

Review 4.  The function of spliceosome components in open mitosis.

Authors:  Jennifer C Hofmann; Alma Husedzinovic; Oliver J Gruss
Journal:  Nucleus       Date:  2010-08-13       Impact factor: 4.197

Review 5.  Spliceosome structure and function.

Authors:  Cindy L Will; Reinhard Lührmann
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-07-01       Impact factor: 10.005

Review 6.  Ribonucleoprotein multimers and their functions.

Authors:  Franziska Bleichert; Susan J Baserga
Journal:  Crit Rev Biochem Mol Biol       Date:  2010-10       Impact factor: 8.250

Review 7.  Down-regulation of a host microRNA by a viral noncoding RNA.

Authors:  D Cazalla; J A Steitz
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2010-12-07

8.  Protein arginine methylation facilitates cotranscriptional recruitment of pre-mRNA splicing factors.

Authors:  Yin-Chu Chen; Eric J Milliman; Isabelle Goulet; Jocelyn Côté; Christopher A Jackson; Jennifer A Vollbracht; Michael C Yu
Journal:  Mol Cell Biol       Date:  2010-09-07       Impact factor: 4.272

9.  Given dimensions of neoplastic events as aberrantly operative alternative splicing.

Authors:  Lawrence M Agius
Journal:  Patholog Res Int       Date:  2009-10-12

10.  Identification and characterisation of a novel GHR defect disrupting the polypyrimidine tract and resulting in GH insensitivity.

Authors:  A David; F Miraki-Moud; N J Shaw; M O Savage; A J L Clark; L A Metherell
Journal:  Eur J Endocrinol       Date:  2009-10-07       Impact factor: 6.664

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