Literature DB >> 19394293

An alpha motif at Tas3 C terminus mediates RITS cis spreading and promotes heterochromatic gene silencing.

Haitao Li1, Mohammad R Motamedi, Calvin K Yip, Zhanxin Wang, Thomas Walz, Dinshaw J Patel, Danesh Moazed.   

Abstract

RNA interference (RNAi) plays a pivotal role in the formation of heterochromatin at the fission yeast centromeres. The RNA-induced transcriptional silencing (RITS) complex, composed of heterochromatic small interfering RNAs (siRNAs), the siRNA-binding protein Ago1, the chromodomain protein Chp1, and the Ago1/Chp1-interacting protein Tas3, provides a physical tether between the RNAi and heterochromatin assembly pathways. Here, we report the structural and functional characterization of a C-terminal Tas3 alpha-helical motif (TAM), which self-associates into a helical polymer and is required for cis spreading of RITS in centromeric DNA regions. Site-directed mutations of key residues within the hydrophobic monomer-monomer interface disrupt Tas3-TAM polymeric self-association in vitro and result in loss of gene silencing, spreading of RITS, and a dramatic reduction in centromeric siRNAs in vivo. These results demonstrate that, in addition to the chromodomain of Chp1 and siRNA-loaded Ago1, Tas3 self-association is required for RITS spreading and efficient heterochromatic gene silencing at centromeric repeat regions.

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Year:  2009        PMID: 19394293      PMCID: PMC2756231          DOI: 10.1016/j.molcel.2009.02.032

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  46 in total

1.  Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assembly.

Authors:  J Nakayama ; J C Rice; B D Strahl; C D Allis; S I Grewal
Journal:  Science       Date:  2001-03-15       Impact factor: 47.728

Review 2.  Multivalent engagement of chromatin modifications by linked binding modules.

Authors:  Alexander J Ruthenburg; Haitao Li; Dinshaw J Patel; C David Allis
Journal:  Nat Rev Mol Cell Biol       Date:  2007-12       Impact factor: 94.444

3.  Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons.

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4.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

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Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

5.  RNAi components are required for nuclear clustering of Polycomb group response elements.

Authors:  Charlotte Grimaud; Frédéric Bantignies; Manika Pal-Bhadra; Pallavi Ghana; Utpal Bhadra; Giacomo Cavalli
Journal:  Cell       Date:  2006-03-10       Impact factor: 41.582

6.  A chromodomain protein, Chp1, is required for the establishment of heterochromatin in fission yeast.

Authors:  Mahito Sadaie; Tetsushi Iida; Takeshi Urano; Jun-Ichi Nakayama
Journal:  EMBO J       Date:  2004-09-16       Impact factor: 11.598

Review 7.  The roles of histone modifications and small RNA in centromere function.

Authors:  Karl Ekwall
Journal:  Chromosome Res       Date:  2004       Impact factor: 5.239

8.  Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi.

Authors:  Thomas A Volpe; Catherine Kidner; Ira M Hall; Grace Teng; Shiv I S Grewal; Robert A Martienssen
Journal:  Science       Date:  2002-08-22       Impact factor: 47.728

9.  HP1 proteins form distinct complexes and mediate heterochromatic gene silencing by nonoverlapping mechanisms.

Authors:  Mohammad R Motamedi; Eun-Jin Erica Hong; Xue Li; Scott Gerber; Carilee Denison; Steven Gygi; Danesh Moazed
Journal:  Mol Cell       Date:  2008-12-26       Impact factor: 17.970

10.  Negative Staining and Image Classification - Powerful Tools in Modern Electron Microscopy.

Authors:  Melanie Ohi; Ying Li; Yifan Cheng; Thomas Walz
Journal:  Biol Proced Online       Date:  2004-03-19       Impact factor: 3.244

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  20 in total

Review 1.  Chromatin higher-order structure and dynamics.

Authors:  Christopher L Woodcock; Rajarshi P Ghosh
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-04-07       Impact factor: 10.005

Review 2.  Phylogenetic comparison of small RNA-triggered transcriptional gene silencing.

Authors:  Xizhe Zhang; John J Rossi
Journal:  J Biol Chem       Date:  2011-07-05       Impact factor: 5.157

Review 3.  RITS-connecting transcription, RNA interference, and heterochromatin assembly in fission yeast.

Authors:  Kevin M Creamer; Janet F Partridge
Journal:  Wiley Interdiscip Rev RNA       Date:  2011-03-23       Impact factor: 9.957

Review 4.  RNA-induced initiation of transcriptional silencing (RITS) complex structure and function.

Authors:  Sonali Bhattacharjee; Benjamin Roche; Robert A Martienssen
Journal:  RNA Biol       Date:  2019-06-18       Impact factor: 4.652

Review 5.  Regulation of histone methylation by noncoding RNAs.

Authors:  Richard I Joh; Christina M Palmieri; Ian T Hill; Mo Motamedi
Journal:  Biochim Biophys Acta       Date:  2014-06-17

6.  S. pombe replication protein Cdc18 (Cdc6) interacts with Swi6 (HP1) heterochromatin protein: region specific effects and replication timing in the centromere.

Authors:  Pao-Chen Li; Louise Chretien; Jocelyn Côté; Thomas J Kelly; Susan L Forsburg
Journal:  Cell Cycle       Date:  2011-01-15       Impact factor: 4.534

7.  Noncoding RNA-nucleated heterochromatin spreading is intrinsically labile and requires accessory elements for epigenetic stability.

Authors:  R A Greenstein; Stephen K Jones; Eric C Spivey; James R Rybarski; Ilya J Finkelstein; Bassem Al-Sady
Journal:  Elife       Date:  2018-07-18       Impact factor: 8.140

Review 8.  RNAi-dependent formation of heterochromatin and its diverse functions.

Authors:  Shiv Is Grewal
Journal:  Curr Opin Genet Dev       Date:  2010-03-06       Impact factor: 5.578

9.  WD40 repeats arrange histone tails for spreading of silencing.

Authors:  Tamaki Suganuma; Jerry L Workman
Journal:  J Mol Cell Biol       Date:  2009-12-11       Impact factor: 6.216

10.  UTX mediates demethylation of H3K27me3 at muscle-specific genes during myogenesis.

Authors:  Shayesta Seenundun; Shravanti Rampalli; Qi-Cai Liu; Arif Aziz; Carmen Palii; SunHwa Hong; Alexandre Blais; Marjorie Brand; Kai Ge; Francis Jeffrey Dilworth
Journal:  EMBO J       Date:  2010-03-18       Impact factor: 11.598

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