Literature DB >> 19388076

High-throughput screening of optimal solution conditions for structural biological studies by fluorescence correlation spectroscopy.

Toshihiko Sugiki1, Chie Yoshiura, Yutaka Kofuku, Takumi Ueda, Ichio Shimada, Hideo Takahashi.   

Abstract

Protein aggregation is an essential molecular event in a wide variety of biological situations, and is a causal factor in several degenerative diseases. The aggregation of proteins also frequently hampers structural biological analyses, such as solution NMR studies. Therefore, precise detection and characterization of protein aggregation are of crucial importance for various research fields. In this study, we demonstrate that fluorescence correlation spectroscopy (FCS) using a single-molecule fluorescence detection system enables the detection of otherwise invisible aggregation of proteins at higher protein concentrations, which are suitable for structural biological experiments, and consumes relatively small amounts of protein over a short measurement time. Furthermore, utilizing FCS, we established a method for high-throughput screening of protein aggregation and optimal solution conditions for structural biological experiments.

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Year:  2009        PMID: 19388076      PMCID: PMC2771313          DOI: 10.1002/pro.92

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  13 in total

1.  Screening crystallisation conditions using fluorescence correlation spectroscopy.

Authors:  Ralf Schmauder; Thomas Schmidt; Jan Pieter Abrahams; Maxim E Kuil
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-09-26

2.  A straight-forward method of optimising protein solubility for NMR.

Authors:  Peter W A Howe
Journal:  J Biomol NMR       Date:  2004-11       Impact factor: 2.835

3.  NMR screening and crystal quality of bacterially expressed prokaryotic and eukaryotic proteins in a structural genomics pipeline.

Authors:  Rebecca Page; Wolfgang Peti; Ian A Wilson; Raymond C Stevens; Kurt Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-27       Impact factor: 11.205

Review 4.  Protein aggregation and aggregate toxicity: new insights into protein folding, misfolding diseases and biological evolution.

Authors:  Massimo Stefani; Christopher M Dobson
Journal:  J Mol Med (Berl)       Date:  2003-08-27       Impact factor: 4.599

5.  Microdrop screening: a rapid method to optimize solvent conditions for NMR spectroscopy of proteins.

Authors:  C A Lepre; J M Moore
Journal:  J Biomol NMR       Date:  1998-11       Impact factor: 2.835

6.  Fluorescence correlation spectrometry of the interaction kinetics of tetramethylrhodamin alpha-bungarotoxin with Torpedo californica acetylcholine receptor.

Authors:  B Rauer; E Neumann; J Widengren; R Rigler
Journal:  Biophys Chem       Date:  1996-01-16       Impact factor: 2.352

7.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

8.  Molecular machinery for non-vesicular trafficking of ceramide.

Authors:  Kentaro Hanada; Keigo Kumagai; Satoshi Yasuda; Yukiko Miura; Miyuki Kawano; Masayoshi Fukasawa; Masahiro Nishijima
Journal:  Nature       Date:  2003-12-18       Impact factor: 49.962

9.  Correct diffusion coefficients of proteins in fluorescence correlation spectroscopy. Application to tubulin oligomers induced by Mg2+ and Paclitaxel.

Authors:  Tatiana Krouglova; Jo Vercammen; Yves Engelborghs
Journal:  Biophys J       Date:  2004-10       Impact factor: 4.033

10.  Identification of RANTES, MIP-1 alpha, and MIP-1 beta as the major HIV-suppressive factors produced by CD8+ T cells.

Authors:  F Cocchi; A L DeVico; A Garzino-Demo; S K Arya; R C Gallo; P Lusso
Journal:  Science       Date:  1995-12-15       Impact factor: 47.728

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  6 in total

1.  Characterizing diffusion dynamics of a membrane protein associated with nanolipoproteins using fluorescence correlation spectroscopy.

Authors:  Tingjuan Gao; Craig D Blanchette; Wei He; Feliza Bourguet; Sonny Ly; Federico Katzen; Wieslaw A Kudlicki; Paul T Henderson; Ted A Laurence; Thomas Huser; Matthew A Coleman
Journal:  Protein Sci       Date:  2011-02       Impact factor: 6.725

2.  Using NMR Chemical Shifts to Determine Residue-Specific Secondary Structure Populations for Intrinsically Disordered Proteins.

Authors:  Wade M Borcherds; Gary W Daughdrill
Journal:  Methods Enzymol       Date:  2018-10-22       Impact factor: 1.600

3.  Phosphoinositide binding by the PH domain in ceramide transfer protein (CERT) is inhibited by hyperphosphorylation of an adjacent serine-repeat motif.

Authors:  Toshihiko Sugiki; Daichi Egawa; Keigo Kumagai; Chojiro Kojima; Toshimichi Fujiwara; Koh Takeuchi; Ichio Shimada; Kentaro Hanada; Hideo Takahashi
Journal:  J Biol Chem       Date:  2018-05-30       Impact factor: 5.157

4.  Fluorescence fluctuation spectroscopy: ushering in a new age of enlightenment for cellular dynamics.

Authors:  David M Jameson; Justin A Ross; Joseph P Albanesi
Journal:  Biophys Rev       Date:  2009-09-01

Review 5.  Modern Technologies of Solution Nuclear Magnetic Resonance Spectroscopy for Three-dimensional Structure Determination of Proteins Open Avenues for Life Scientists.

Authors:  Toshihiko Sugiki; Naohiro Kobayashi; Toshimichi Fujiwara
Journal:  Comput Struct Biotechnol J       Date:  2017-04-13       Impact factor: 7.271

6.  Crystal structure of the pleckstrin homology domain from the ceramide transfer protein: implications for conformational change upon ligand binding.

Authors:  Jennifer Prashek; Trung Truong; Xiaolan Yao
Journal:  PLoS One       Date:  2013-11-18       Impact factor: 3.240

  6 in total

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