Literature DB >> 19378258

Genomic control of patterning.

Isabelle S Peter1, Eric H Davidson.   

Abstract

The development of multicellular organisms involves the partitioning of the organism into territories of cells of specific structure and function. The information for spatial patterning processes is directly encoded in the genome. The genome determines its own usage depending on stage and position, by means of interactions that constitute gene regulatory networks (GRNs). The GRN driving endomesoderm development in sea urchin embryos illustrates different regulatory strategies by which developmental programs are initiated, orchestrated, stabilized or excluded to define the pattern of specified territories in the developing embryo.

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Year:  2009        PMID: 19378258      PMCID: PMC3967875          DOI: 10.1387/ijdb.072495ip

Source DB:  PubMed          Journal:  Int J Dev Biol        ISSN: 0214-6282            Impact factor:   2.203


  48 in total

1.  Whole-genome analysis of dorsal-ventral patterning in the Drosophila embryo.

Authors:  Angelike Stathopoulos; Madeleine Van Drenth; Albert Erives; Michele Markstein; Michael Levine
Journal:  Cell       Date:  2002-11-27       Impact factor: 41.582

2.  Activation of pmar1 controls specification of micromeres in the sea urchin embryo.

Authors:  Paola Oliveri; Eric H Davidson; David R McClay
Journal:  Dev Biol       Date:  2003-06-01       Impact factor: 3.582

Review 3.  Transcription regulation and animal diversity.

Authors:  Michael Levine; Robert Tjian
Journal:  Nature       Date:  2003-07-10       Impact factor: 49.962

4.  Developmental gene regulatory network architecture across 500 million years of echinoderm evolution.

Authors:  Veronica F Hinman; Albert T Nguyen; R Andrew Cameron; Eric H Davidson
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-31       Impact factor: 11.205

5.  Differential stability of beta-catenin along the animal-vegetal axis of the sea urchin embryo mediated by dishevelled.

Authors:  Heather E Weitzel; Michele R Illies; Christine A Byrum; Ronghui Xu; Athula H Wikramanayake; Charles A Ettensohn
Journal:  Development       Date:  2004-05-19       Impact factor: 6.868

6.  An otx cis-regulatory module: a key node in the sea urchin endomesoderm gene regulatory network.

Authors:  Chiou-Hwa Yuh; Elizabeth R Dorman; Meredith L Howard; Eric H Davidson
Journal:  Dev Biol       Date:  2004-05-15       Impact factor: 3.582

7.  A genetic regulatory network for Xenopus mesendoderm formation.

Authors:  Matthew Loose; Roger Patient
Journal:  Dev Biol       Date:  2004-07-15       Impact factor: 3.582

Review 8.  Gene regulatory network controlling embryonic specification in the sea urchin.

Authors:  Paola Oliveri; Eric H Davidson
Journal:  Curr Opin Genet Dev       Date:  2004-08       Impact factor: 5.578

9.  Patchy interspecific sequence similarities efficiently identify positive cis-regulatory elements in the sea urchin.

Authors:  Chiou-Hwa Yuh; C Titus Brown; Carolina B Livi; Lee Rowen; Peter J C Clarke; Eric H Davidson
Journal:  Dev Biol       Date:  2002-06-01       Impact factor: 3.582

10.  LvDelta is a mesoderm-inducing signal in the sea urchin embryo and can endow blastomeres with organizer-like properties.

Authors:  Hyla C Sweet; Michael Gehring; Charles A Ettensohn
Journal:  Development       Date:  2002-04       Impact factor: 6.868

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  11 in total

1.  Functional cis-regulatory genomics for systems biology.

Authors:  Jongmin Nam; Ping Dong; Ryan Tarpine; Sorin Istrail; Eric H Davidson
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-08       Impact factor: 11.205

2.  ATP-binding cassette (ABC) transporter expression and localization in sea urchin development.

Authors:  Lauren E Shipp; Amro Hamdoun
Journal:  Dev Dyn       Date:  2012-05-02       Impact factor: 3.780

3.  Quantifying the Bicoid morphogen gradient in living fly embryos.

Authors:  Alexander H Morrison; Martin Scheeler; Julien Dubuis; Thomas Gregor
Journal:  Cold Spring Harb Protoc       Date:  2012-04-01

4.  Paleogenomics of echinoids reveals an ancient origin for the double-negative specification of micromeres in sea urchins.

Authors:  Jeffrey R Thompson; Eric M Erkenbrack; Veronica F Hinman; Brenna S McCauley; Elizabeth Petsios; David J Bottjer
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-06       Impact factor: 11.205

5.  Patterned differentiation of individual embryoid bodies in spatially organized 3D hybrid microgels.

Authors:  Hao Qi; Yanan Du; Lianyong Wang; Hirokazu Kaji; Hojae Bae; Ali Khademhosseini
Journal:  Adv Mater       Date:  2010-12-07       Impact factor: 30.849

Review 6.  Network design principles from the sea urchin embryo.

Authors:  Eric H Davidson
Journal:  Curr Opin Genet Dev       Date:  2009-11-11       Impact factor: 5.578

7.  Eric Davidson: Steps to a gene regulatory network for development.

Authors:  Ellen V Rothenberg
Journal:  Dev Biol       Date:  2016-01-26       Impact factor: 3.582

8.  An atlas of gene regulatory networks reveals multiple three-gene mechanisms for interpreting morphogen gradients.

Authors:  James Cotterell; James Sharpe
Journal:  Mol Syst Biol       Date:  2010-11-02       Impact factor: 11.429

9.  Systematic comparison of sea urchin and sea star developmental gene regulatory networks explains how novelty is incorporated in early development.

Authors:  Gregory A Cary; Brenna S McCauley; Olga Zueva; Joseph Pattinato; William Longabaugh; Veronica F Hinman
Journal:  Nat Commun       Date:  2020-12-04       Impact factor: 14.919

Review 10.  Pattern formation today.

Authors:  Cheng-Ming Chuong; Michael K Richardson
Journal:  Int J Dev Biol       Date:  2009       Impact factor: 2.148

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