Literature DB >> 15261650

Gene regulatory network controlling embryonic specification in the sea urchin.

Paola Oliveri1, Eric H Davidson.   

Abstract

The current state of the gene regulatory network for endomesoderm specification in sea urchin embryos is reviewed. The network was experimentally defined, and is presented as a predictive map of cis-regulatory inputs and functional regulatory gene interconnections (updated versions of the network and most of the underlying data are at ). The network illuminates the 'whys' of many aspects of zygotic control in early sea urchin development, both spatial and temporal. The network includes almost 50 genes, and these are organized in subcircuits, each of which executes a particular regulatory function. Copyright 2004 Elsevier Ltd.

Entities:  

Keywords:  Non-programmatic

Mesh:

Year:  2004        PMID: 15261650     DOI: 10.1016/j.gde.2004.06.004

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  45 in total

1.  An integer programming formulation to identify the sparse network architecture governing differentiation of embryonic stem cells.

Authors:  Ipsita Banerjee; Spandan Maiti; Natesh Parashurama; Martin Yarmush
Journal:  Bioinformatics       Date:  2010-03-31       Impact factor: 6.937

2.  Frizzled1/2/7 signaling directs β-catenin nuclearisation and initiates endoderm specification in macromeres during sea urchin embryogenesis.

Authors:  Guy Lhomond; David R McClay; Christian Gache; Jenifer C Croce
Journal:  Development       Date:  2012-02       Impact factor: 6.868

Review 3.  Logic functions of the genomic cis-regulatory code.

Authors:  Sorin Istrail; Eric H Davidson
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-23       Impact factor: 11.205

Review 4.  Gene regulatory networks for development.

Authors:  Michael Levine; Eric H Davidson
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-23       Impact factor: 11.205

5.  An evolutionary constraint: strongly disfavored class of change in DNA sequence during divergence of cis-regulatory modules.

Authors:  R Andrew Cameron; Suk Hen Chow; Kevin Berney; Tsz-Yeung Chiu; Qiu-Autumn Yuan; Alexander Krämer; Argelia Helguero; Andrew Ransick; Mirong Yun; Eric H Davidson
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-08       Impact factor: 11.205

Review 6.  High regulatory gene use in sea urchin embryogenesis: Implications for bilaterian development and evolution.

Authors:  Meredith Howard-Ashby; Stefan C Materna; C Titus Brown; Qiang Tu; Paola Oliveri; R Andrew Cameron; Eric H Davidson
Journal:  Dev Biol       Date:  2006-10-18       Impact factor: 3.582

7.  Evolutionary plasticity of developmental gene regulatory network architecture.

Authors:  Veronica F Hinman; Eric H Davidson
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-27       Impact factor: 11.205

8.  A spatially dynamic cohort of regulatory genes in the endomesodermal gene network of the sea urchin embryo.

Authors:  Joel Smith; Ebba Kraemer; Hongdau Liu; Christina Theodoris; Eric Davidson
Journal:  Dev Biol       Date:  2007-11-09       Impact factor: 3.582

9.  Maps of cis-Regulatory Nodes in Megabase Long Genome Segments are an Inevitable Intermediate Step Toward Whole Genome Functional Mapping.

Authors:  Lev G Nikolaev; Sergey B Akopov; Igor P Chernov; Eugene D Sverdlov
Journal:  Curr Genomics       Date:  2007-04       Impact factor: 2.236

10.  Blocking Dishevelled signaling in the noncanonical Wnt pathway in sea urchins disrupts endoderm formation and spiculogenesis, but not secondary mesoderm formation.

Authors:  Christine A Byrum; Ronghui Xu; Joanna M Bince; David R McClay; Athula H Wikramanayake
Journal:  Dev Dyn       Date:  2009-07       Impact factor: 3.780

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