Literature DB >> 19557673

Pattern formation today.

Cheng-Ming Chuong1, Michael K Richardson.   

Abstract

Patterns are orders embedded in randomness. They may appear as spatial arrangements or temporal series, and the elements may appear identical or with variations. Patterns exist in the physical world as well as in living systems. In the biological world, patterns can range from simple to complex, forming the basic building blocks of life. The process which generates this ordering in the biological world was termed pattern formation. Since Wolpert promoted this concept four decades ago, scientists from molecular biology, developmental biology, stem cell biology, tissue engineering, theoretical modeling and other disciplines have made remarkable progress towards understanding its mechanisms. It is time to review and re-integrate our understanding. Here, we explore the origin of pattern formation, how the genetic code is translated into biological form, and how complex phenotypes are selected over evolutionary time. We present four topics: Principles, Evolution, Development, and Stem Cells and Regeneration. We have interviewed several leaders in the field to gain insight into how their research and the field of pattern formation have shaped each other. We have learned that both molecular process and physico-chemical principles are important for biological pattern formation. New understanding will emerge through integration of the analytical approach of molecular-genetic manipulation and the systemic approach of model simulation. We regret that we could not include every major investigator in the field, but hope that this Special Issue of the Int. J. Dev. Biol. represents a sample of our knowledge of pattern formation today, which will help to stimulate more research on this fundamental process.

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Year:  2009        PMID: 19557673      PMCID: PMC2874132          DOI: 10.1387/ijdb.082594cc

Source DB:  PubMed          Journal:  Int J Dev Biol        ISSN: 0214-6282            Impact factor:   2.148


  41 in total

Review 1.  Gene regulatory networks and the evolution of animal body plans.

Authors:  Eric H Davidson; Douglas H Erwin
Journal:  Science       Date:  2006-02-10       Impact factor: 47.728

2.  The sudden appearance of diverse animal body plansduring the Cambrian explosion.

Authors:  Jun-Yuan Chen
Journal:  Int J Dev Biol       Date:  2009       Impact factor: 2.203

3.  Positional information and the spatial pattern of cellular differentiation.

Authors:  L Wolpert
Journal:  J Theor Biol       Date:  1969-10       Impact factor: 2.691

4.  Diffusion in embryogenesis.

Authors:  F Crick
Journal:  Nature       Date:  1970-01-31       Impact factor: 49.962

5.  Temporal colinearity and the phylotypic progression: a basis for the stability of a vertebrate Bauplan and the evolution of morphologies through heterochrony.

Authors:  D Duboule
Journal:  Dev Suppl       Date:  1994

Review 6.  Pattern formation in the Drosophila eye disc.

Authors:  Jean-Yves Roignant; Jessica E Treisman
Journal:  Int J Dev Biol       Date:  2009       Impact factor: 2.203

7.  Regeneration and pattern formation - an interview with Susan Bryant. Interviewed by Richardson, Michael K and Chuong, Cheng-Ming.

Authors:  Susan Bryant
Journal:  Int J Dev Biol       Date:  2009       Impact factor: 2.203

Review 8.  Integument pattern formation involves genetic and epigenetic controls: feather arrays simulated by digital hormone models.

Authors:  Ting-Xin Jiang; Randall B Widelitz; Wei-Min Shen; Peter Will; Da-Yu Wu; Chih-Min Lin; Han-Sung Jung; Cheng-Ming Chuong
Journal:  Int J Dev Biol       Date:  2004       Impact factor: 2.148

Review 9.  Reptile scale paradigm: Evo-Devo, pattern formation and regeneration.

Authors:  Cheng Chang; Ping Wu; Ruth E Baker; Philip K Maini; Lorenzo Alibardi; Cheng-Ming Chuong
Journal:  Int J Dev Biol       Date:  2009       Impact factor: 2.148

Review 10.  Analyses of regenerative wave patterns in adult hair follicle populations reveal macro-environmental regulation of stem cell activity.

Authors:  Maksim V Plikus; Randall B Widelitz; Rob Maxson; Cheng-Ming Chuong
Journal:  Int J Dev Biol       Date:  2009       Impact factor: 2.148

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  12 in total

Review 1.  Cytosystems dynamics in self-organization of tissue architecture.

Authors:  Yoshiki Sasai
Journal:  Nature       Date:  2013-01-17       Impact factor: 49.962

Review 2.  p53/p63/p73 in the epidermis in health and disease.

Authors:  Vladimir A Botchkarev; Elsa R Flores
Journal:  Cold Spring Harb Perspect Med       Date:  2014-08-01       Impact factor: 6.915

3.  Deciphering principles of morphogenesis from temporal and spatial patterns on the integument.

Authors:  Ang Li; Yung-Chih Lai; Seth Figueroa; Tian Yang; Randall B Widelitz; Krzysztof Kobielak; Qing Nie; Cheng Ming Chuong
Journal:  Dev Dyn       Date:  2015-07-06       Impact factor: 3.780

4.  Patterning skin by planar cell polarity: the multi-talented hair designer.

Authors:  Jiang Chen; Cheng-Ming Chuong
Journal:  Exp Dermatol       Date:  2012-02       Impact factor: 3.960

5.  Self-organization process in newborn skin organoid formation inspires strategy to restore hair regeneration of adult cells.

Authors:  Mingxing Lei; Linus J Schumacher; Yung-Chih Lai; Wen-Tau Juan; Chao-Yuan Yeh; Ping Wu; Ting-Xin Jiang; Ruth E Baker; Randall Bruce Widelitz; Li Yang; Cheng-Ming Chuong
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-10       Impact factor: 11.205

6.  In search of the Golden Fleece: unraveling principles of morphogenesis by studying the integrative biology of skin appendages.

Authors:  Michael W Hughes; Ping Wu; Ting-Xin Jiang; Sung-Jan Lin; Chen-Yuan Dong; Ang Li; Fon-Jou Hsieh; Randall B Widelitz; Cheng Ming Chuong
Journal:  Integr Biol (Camb)       Date:  2011-03-24       Impact factor: 2.192

7.  Self-organizing and stochastic behaviors during the regeneration of hair stem cells.

Authors:  Maksim V Plikus; Ruth E Baker; Chih-Chiang Chen; Clyde Fare; Damon de la Cruz; Thomas Andl; Philip K Maini; Sarah E Millar; Randall Widelitz; Cheng-Ming Chuong
Journal:  Science       Date:  2011-04-29       Impact factor: 47.728

Review 8.  Module-based complexity formation: periodic patterning in feathers and hairs.

Authors:  Cheng-Ming Chuong; Chao-Yuan Yeh; Ting-Xin Jiang; Randall Widelitz
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2013 Jan-Feb       Impact factor: 5.814

9.  Topology of feather melanocyte progenitor niche allows complex pigment patterns to emerge.

Authors:  S J Lin; J Foley; T X Jiang; C Y Yeh; P Wu; A Foley; C M Yen; Y C Huang; H C Cheng; C F Chen; B Reeder; S H Jee; R B Widelitz; C M Chuong
Journal:  Science       Date:  2013-04-25       Impact factor: 47.728

10.  Strong inter-population cooperation leads to partner intermixing in microbial communities.

Authors:  Babak Momeni; Kristen A Brileya; Matthew W Fields; Wenying Shou
Journal:  Elife       Date:  2013-01-22       Impact factor: 8.140

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