Literature DB >> 19377292

DNA excision repair proteins and Gadd45 as molecular players for active DNA demethylation.

Dengke K Ma1, Junjie U Guo, Guo-li Ming, Hongjun Song.   

Abstract

DNA cytosine methylation represents an intrinsic modification signal of the genome that plays important roles in heritable gene silencing, heterochromatin formation and certain transgenerational epigenetic inheritance. In contrast to the process of DNA methylation that is catalyzed by specific classes of methyltransferases, molecular players underlying active DNA demethylation have long been elusive. Emerging biochemical and functional evidence suggests that active DNA demethylation in vertebrates can be mediated through DNA excision repair enzymes, similar to the well-known repair-based DNA demethylation mechanism in Arabidopsis. As key regulators, non-enzymatic Gadd45 proteins function to recruit enzymatic machineries and promote coupling of deamination, base and nucleotide-excision repair in the process of DNA demethylation. In this article, we review recent findings and discuss functional and evolutionary implications of such mechanisms underlying active DNA demethylation.

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Year:  2009        PMID: 19377292      PMCID: PMC2738863          DOI: 10.4161/cc.8.10.8500

Source DB:  PubMed          Journal:  Cell Cycle        ISSN: 1551-4005            Impact factor:   4.534


  69 in total

1.  Gadd45 family proteins are coactivators of nuclear hormone receptors.

Authors:  Y W Yi; D Kim; N Jung; S S Hong; H S Lee; I Bae
Journal:  Biochem Biophys Res Commun       Date:  2000-05-27       Impact factor: 3.575

Review 2.  DNA methylation patterns and epigenetic memory.

Authors:  Adrian Bird
Journal:  Genes Dev       Date:  2002-01-01       Impact factor: 11.361

3.  5-Methylcytosine DNA glycosylase participates in the genome-wide loss of DNA methylation occurring during mouse myoblast differentiation.

Authors:  J P Jost; E J Oakeley; B Zhu; D Benjamin; S Thiry; M Siegmann; Y C Jost
Journal:  Nucleic Acids Res       Date:  2001-11-01       Impact factor: 16.971

Review 4.  Epigenetic reprogramming in mammalian development.

Authors:  W Reik; W Dean; J Walter
Journal:  Science       Date:  2001-08-10       Impact factor: 47.728

5.  The role of DNA methylation in mammalian epigenetics.

Authors:  P A Jones; D Takai
Journal:  Science       Date:  2001-08-10       Impact factor: 47.728

Review 6.  Gilbert's conjecture: the search for DNA (cytosine-5) demethylases and the emergence of new functions for eukaryotic DNA (cytosine-5) methyltransferases.

Authors:  S S Smith
Journal:  J Mol Biol       Date:  2000-09-08       Impact factor: 5.469

7.  5-methylcytosine-DNA glycosylase activity is present in a cloned G/T mismatch DNA glycosylase associated with the chicken embryo DNA demethylation complex.

Authors:  B Zhu; Y Zheng; D Hess; H Angliker; S Schwarz; M Siegmann; S Thiry; J P Jost
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-09       Impact factor: 11.205

8.  5-Methylcytosine DNA glycosylase activity is also present in the human MBD4 (G/T mismatch glycosylase) and in a related avian sequence.

Authors:  B Zhu; Y Zheng; H Angliker; S Schwarz; S Thiry; M Siegmann; J P Jost
Journal:  Nucleic Acids Res       Date:  2000-11-01       Impact factor: 16.971

9.  Efficiency of incision of an AP site within clustered DNA damage by the major human AP endonuclease.

Authors:  Marie-Hélène David-Cordonnier; Siobhan M T Cunniffe; Ian D Hickson; Peter O'Neill
Journal:  Biochemistry       Date:  2002-01-15       Impact factor: 3.162

10.  Oligomerization of human Gadd45a protein.

Authors:  O Kovalsky; F D Lung; P P Roller; A J Fornace
Journal:  J Biol Chem       Date:  2001-08-09       Impact factor: 5.157

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  77 in total

1.  Downregulation of Gadd45beta expression by hepatitis C virus leads to defective cell cycle arrest.

Authors:  Martin R Higgs; Hervé Lerat; Jean-Michel Pawlotsky
Journal:  Cancer Res       Date:  2010-06-08       Impact factor: 12.701

2.  DNA methylation and memory formation.

Authors:  Jeremy J Day; J David Sweatt
Journal:  Nat Neurosci       Date:  2010-11       Impact factor: 24.884

3.  Injury-dependent Müller glia and ganglion cell reprogramming during tissue regeneration requires Apobec2a and Apobec2b.

Authors:  Curtis Powell; Fairouz Elsaeidi; Daniel Goldman
Journal:  J Neurosci       Date:  2012-01-18       Impact factor: 6.167

Review 4.  Gadd45 proteins: relevance to aging, longevity and age-related pathologies.

Authors:  Alexey A Moskalev; Zeljka Smit-McBride; Mikhail V Shaposhnikov; Ekaterina N Plyusnina; Alex Zhavoronkov; Arie Budovsky; Robi Tacutu; Vadim E Fraifeld
Journal:  Ageing Res Rev       Date:  2011-10-05       Impact factor: 10.895

5.  Epigenetic changes coincide with in vitro primate GnRH neuronal maturation.

Authors:  Joseph R Kurian; Kim L Keen; Ei Terasawa
Journal:  Endocrinology       Date:  2010-09-22       Impact factor: 4.736

Review 6.  Role of epigenetic aberrations in the development and progression of human hepatocellular carcinoma.

Authors:  Igor P Pogribny; Ivan Rusyn
Journal:  Cancer Lett       Date:  2012-02-02       Impact factor: 8.679

7.  DNA methylation regulates cocaine-induced behavioral sensitization in mice.

Authors:  Kaili Anier; Kristina Malinovskaja; Anu Aonurm-Helm; Alexander Zharkovsky; Anti Kalda
Journal:  Neuropsychopharmacology       Date:  2010-08-18       Impact factor: 7.853

8.  Hepatic ontogeny and tissue distribution of mRNAs of epigenetic modifiers in mice using RNA-sequencing.

Authors:  Hong Lu; Julia Yue Cui; Sumedha Gunewardena; Byunggil Yoo; Xiao-bo Zhong; Curtis D Klaassen
Journal:  Epigenetics       Date:  2012-07-09       Impact factor: 4.528

9.  Hydroxylation of 5-methylcytosine by TET1 promotes active DNA demethylation in the adult brain.

Authors:  Junjie U Guo; Yijing Su; Chun Zhong; Guo-li Ming; Hongjun Song
Journal:  Cell       Date:  2011-04-14       Impact factor: 41.582

Review 10.  Evidence from clinical and animal model studies of the long-term and transgenerational impact of stress on DNA methylation.

Authors:  Jennifer Blaze; Tania L Roth
Journal:  Semin Cell Dev Biol       Date:  2015-04-23       Impact factor: 7.727

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