Literature DB >> 19375905

Replisome structure and conformational dynamics underlie fork progression past obstacles.

Nina Y Yao1, Mike O'Donnell.   

Abstract

Replisomes are multiprotein complexes that unzip the parental helix and duplicate the separated strands during genome replication. The antiparallel structure of DNA poses unique geometric constraints to the process, and the replisome has evolved unique dynamic features that solve this problem. Interestingly, the solution to duplex DNA replication has been co-opted to solve many other important problems that replisomes must contend with during the duplication of long chromosomes. For example, along its path the replisome will encounter lesions and DNA-bound proteins. Recent studies show that the replisome can circumvent lesions on either strand, using the strategy normally applied to the lagging strand synthesis. Circumventing lesions can also be assisted by other proteins that transiently become a part of the replisome. The replisome must also contend with DNA-binding proteins and recent studies reveal a fascinating process that enables it to bypass RNA polymerase without stopping.

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Year:  2009        PMID: 19375905      PMCID: PMC3732650          DOI: 10.1016/j.ceb.2009.02.008

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  47 in total

1.  Interactions between two catalytically distinct MCM subgroups are essential for coordinated ATP hydrolysis and DNA replication.

Authors:  A Schwacha; S P Bell
Journal:  Mol Cell       Date:  2001-11       Impact factor: 17.970

2.  Three-dimensional structure of the beta subunit of E. coli DNA polymerase III holoenzyme: a sliding DNA clamp.

Authors:  X P Kong; R Onrust; M O'Donnell; J Kuriyan
Journal:  Cell       Date:  1992-05-01       Impact factor: 41.582

3.  The dynamic processivity of the T4 DNA polymerase during replication.

Authors:  Jingsong Yang; Zhihao Zhuang; Rosa Maria Roccasecca; Michael A Trakselis; Stephen J Benkovic
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-17       Impact factor: 11.205

Review 4.  Chromosomal replicases as asymmetric dimers: studies of subunit arrangement and functional consequences.

Authors:  Charles S McHenry
Journal:  Mol Microbiol       Date:  2003-09       Impact factor: 3.501

5.  Accessory proteins bind a primed template and mediate rapid cycling of DNA polymerase III holoenzyme from Escherichia coli.

Authors:  M E O'Donnell
Journal:  J Biol Chem       Date:  1987-12-05       Impact factor: 5.157

6.  Efficient in vitro replication of double-stranded DNA templates by a purified T4 bacteriophage replication system.

Authors:  N K Sinha; C F Morris; B M Alberts
Journal:  J Biol Chem       Date:  1980-05-10       Impact factor: 5.157

7.  Substrate requirements for duplex DNA translocation by the eukaryal and archaeal minichromosome maintenance helicases.

Authors:  Jae-Ho Shin; Yun Jiang; Beatrice Grabowski; Jerard Hurwitz; Zvi Kelman
Journal:  J Biol Chem       Date:  2003-09-15       Impact factor: 5.157

8.  Structural analysis of a eukaryotic sliding DNA clamp-clamp loader complex.

Authors:  Gregory D Bowman; Mike O'Donnell; John Kuriyan
Journal:  Nature       Date:  2004-06-17       Impact factor: 49.962

9.  Mcm4,6,7 uses a "pump in ring" mechanism to unwind DNA by steric exclusion and actively translocate along a duplex.

Authors:  Daniel L Kaplan; Megan J Davey; Mike O'Donnell
Journal:  J Biol Chem       Date:  2003-09-17       Impact factor: 5.157

10.  Dynamics of DNA replication loops reveal temporal control of lagging-strand synthesis.

Authors:  Samir M Hamdan; Joseph J Loparo; Masateru Takahashi; Charles C Richardson; Antoine M van Oijen
Journal:  Nature       Date:  2008-11-23       Impact factor: 49.962

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  12 in total

1.  CTC1 deletion results in defective telomere replication, leading to catastrophic telomere loss and stem cell exhaustion.

Authors:  Peili Gu; Jin-Na Min; Yang Wang; Chenhui Huang; Tao Peng; Weihang Chai; Sandy Chang
Journal:  EMBO J       Date:  2012-04-24       Impact factor: 11.598

Review 2.  Balancing eukaryotic replication asymmetry with replication fidelity.

Authors:  Thomas A Kunkel
Journal:  Curr Opin Chem Biol       Date:  2011-08-19       Impact factor: 8.822

3.  SnapShot: The replisome.

Authors:  Nina Y Yao; Mike O'Donnell
Journal:  Cell       Date:  2010-06-11       Impact factor: 41.582

4.  Continued primer synthesis at stalled replication forks contributes to checkpoint activation.

Authors:  Christopher Van; Shan Yan; W Matthew Michael; Shou Waga; Karlene A Cimprich
Journal:  J Cell Biol       Date:  2010-04-12       Impact factor: 10.539

5.  Conserved telomere maintenance component 1 interacts with STN1 and maintains chromosome ends in higher eukaryotes.

Authors:  Yulia V Surovtseva; Dmitri Churikov; Kara A Boltz; Xiangyu Song; Jonathan C Lamb; Ross Warrington; Katherine Leehy; Michelle Heacock; Carolyn M Price; Dorothy E Shippen
Journal:  Mol Cell       Date:  2009-10-23       Impact factor: 17.970

Review 6.  Replication stress: getting back on track.

Authors:  Matteo Berti; Alessandro Vindigni
Journal:  Nat Struct Mol Biol       Date:  2016-02       Impact factor: 15.369

Review 7.  A proposal: Source of single strand DNA that elicits the SOS response.

Authors:  Chiara Indiani; Mike O'Donnell
Journal:  Front Biosci (Landmark Ed)       Date:  2013-01-01

8.  Distinct co-evolution patterns of genes associated to DNA polymerase III DnaE and PolC.

Authors:  Stefan Engelen; David Vallenet; Claudine Médigue; Antoine Danchin
Journal:  BMC Genomics       Date:  2012-02-14       Impact factor: 3.969

9.  Co-orientation of replication and transcription preserves genome integrity.

Authors:  Anjana Srivatsan; Ashley Tehranchi; David M MacAlpine; Jue D Wang
Journal:  PLoS Genet       Date:  2010-01-15       Impact factor: 5.917

10.  Structure of the PolIIIα-τc-DNA complex suggests an atomic model of the replisome.

Authors:  Bin Liu; Jinzhong Lin; Thomas A Steitz
Journal:  Structure       Date:  2013-03-07       Impact factor: 5.006

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