Literature DB >> 19374406

Reduction-triggered fluorescent amplification probe for the detection of endogenous RNAs in living human cells.

Kazuhiro Furukawa1, Hiroshi Abe, Kayo Hibino, Yasushi Sako, Satoshi Tsuneda, Yoshihiro Ito.   

Abstract

Oligonucleotide-templated reactions are attracting attention as a method for RNA detection in living cells. Previously, a reduction-triggered fluorescence probe has been reported that is based on azide reduction to switch fluorescence on. In this article, we report a more advanced probe, a reduction-triggered fluorescent amplification probe that is capable of amplifying a target signal. Azidomethyl fluorescein was newly synthesized and introduced into a probe. Azido-masked fluorescein on the probe showed a strong turn-on fluorescence signal upon oligonucleotide-templated Staudinger reduction. The catalytic reaction of the probe offered a turnover number of 50 as fluorescence readout within 4 h. Finally, probes were introduced into human leukemia HL-60 cells by use of streptolysin O pore-forming peptide. We successfully detected and quantitated the 28S rRNA and beta-Actin mRNA signal above the background by flow cytometry. In addition, the same RNA targets were imaged by fluorescence microscopy. The data suggest that a reduction-triggered amplification probe may be a powerful tool in analyzing the localization, transcription, or processing of RNA species in living eukaryotic cells.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19374406     DOI: 10.1021/bc900040t

Source DB:  PubMed          Journal:  Bioconjug Chem        ISSN: 1043-1802            Impact factor:   4.774


  15 in total

1.  Sandwich probes: two simultaneous reactions for templated nucleic acid detection.

Authors:  Daniel J Kleinbaum; Eric T Kool
Journal:  Chem Commun (Camb)       Date:  2010-10-07       Impact factor: 6.222

2.  Double displacement: An improved bioorthogonal reaction strategy for templated nucleic acid detection.

Authors:  Daniel J Kleinbaum; Gregory P Miller; Eric T Kool
Journal:  Bioconjug Chem       Date:  2010-06-16       Impact factor: 4.774

3.  DNA/RNA Fluorescence Imaging by Synthetic Nucleic Acids.

Authors:  Akimitsu Okamoto
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

4.  Quantification of native mRNA dynamics in living neurons using fluorescence correlation spectroscopy and reduction-triggered fluorescent probes.

Authors:  Hirotaka Fujita; Ryota Oikawa; Mayu Hayakawa; Fumiaki Tomoike; Yasuaki Kimura; Hiroyuki Okuno; Yoshiki Hatashita; Carolina Fiallos Oliveros; Haruhiko Bito; Toshio Ohshima; Satoshi Tsuneda; Hiroshi Abe; Takafumi Inoue
Journal:  J Biol Chem       Date:  2020-04-27       Impact factor: 5.157

5.  Improved templated fluorogenic probes enhance the analysis of closely related pathogenic bacteria by microscopy and flow cytometry.

Authors:  Raphael M Franzini; Eric T Kool
Journal:  Bioconjug Chem       Date:  2011-08-26       Impact factor: 4.774

6.  Two successive reactions on a DNA template: a strategy for improving background fluorescence and specificity in nucleic acid detection.

Authors:  Raphael M Franzini; Eric T Kool
Journal:  Chemistry       Date:  2011-01-10       Impact factor: 5.236

7.  Templated chemistry for sequence-specific fluorogenic detection of duplex DNA.

Authors:  Hao Li; Raphael M Franzini; Christopher Bruner; Eric T Kool
Journal:  Chembiochem       Date:  2010-10-18       Impact factor: 3.164

8.  Templated chemistry for monitoring damage and repair directly in duplex DNA.

Authors:  Seoung Ho Lee; Shenliang Wang; Eric T Kool
Journal:  Chem Commun (Camb)       Date:  2012-07-10       Impact factor: 6.222

9.  Efficient nucleic acid detection by templated reductive quencher release.

Authors:  Raphael M Franzini; Eric T Kool
Journal:  J Am Chem Soc       Date:  2009-11-11       Impact factor: 15.419

10.  Enzymatic incorporation of an azide-modified UTP analog into oligoribonucleotides for post-transcriptional chemical functionalization.

Authors:  Harita Rao; Arun A Tanpure; Anupam A Sawant; Seergazhi G Srivatsan
Journal:  Nat Protoc       Date:  2012-05-10       Impact factor: 13.491

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.