Literature DB >> 19366254

Redox-dependent dynamics in cytochrome P450cam.

Susan Sondej Pochapsky1, Marina Dang, Bo OuYang, Alana K Simorellis, Thomas C Pochapsky.   

Abstract

Local protein backbone dynamics of the camphor hydroxylase cytochrome P450(cam) (CYP101) depend upon the oxidation and ligation state of the heme iron. (1)H-(15)N correlation nuclear magnetic resonance experiments were used to compare backbone dynamics of oxidized and reduced forms of this 414-residue metalloenzyme via hydrogen-deuterium exchange kinetics (H-D exchange) and (15)N relaxation measurements, and these results are compared with previously published results obtained by H-D exchange mass spectrometry. In general, the reduced enzyme exhibits lower-amplitude motions of secondary structural features than the oxidized enzyme on all of the time scales accessible to these experiments, and these differences are more pronounced in regions of the enzyme involved in substrate access to the active site (B' helix and beta3 and beta5 sheets) and binding of putidaredoxin (C and L helices), the iron-sulfur protein that acts as the effector and reductant of CYP101 in vivo. These results are interpreted in terms of local structural effects of changes in the heme oxidation state, and the relevance of the observed effects to the enzyme mechanism is discussed.

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Year:  2009        PMID: 19366254      PMCID: PMC2747118          DOI: 10.1021/bi900002k

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  25 in total

1.  Protein dynamics measurements by TROSY-based NMR experiments.

Authors:  G Zhu; Y Xia; L K Nicholson; K H Sze
Journal:  J Magn Reson       Date:  2000-04       Impact factor: 2.229

2.  How do substrates enter and products exit the buried active site of cytochrome P450cam? 1. Random expulsion molecular dynamics investigation of ligand access channels and mechanisms.

Authors:  S K Lüdemann; V Lounnas; R C Wade
Journal:  J Mol Biol       Date:  2000-11-10       Impact factor: 5.469

3.  How do substrates enter and products exit the buried active site of cytochrome P450cam? 2. Steered molecular dynamics and adiabatic mapping of substrate pathways.

Authors:  S K Lüdemann; V Lounnas; R C Wade
Journal:  J Mol Biol       Date:  2000-11-10       Impact factor: 5.469

4.  A model for effector activity in a highly specific biological electron transfer complex: the cytochrome P450(cam)-putidaredoxin couple.

Authors:  Susan Sondej Pochapsky; Thomas C Pochapsky; Julie W Wei
Journal:  Biochemistry       Date:  2003-05-20       Impact factor: 3.162

5.  High-resolution crystal structure of cytochrome P450cam.

Authors:  T L Poulos; B C Finzel; A J Howard
Journal:  J Mol Biol       Date:  1987-06-05       Impact factor: 5.469

6.  Analysis of the backbone dynamics of interleukin-1 beta using two-dimensional inverse detected heteronuclear 15N-1H NMR spectroscopy.

Authors:  G M Clore; P C Driscoll; P T Wingfield; A M Gronenborn
Journal:  Biochemistry       Date:  1990-08-14       Impact factor: 3.162

7.  Crystal structure of the carbon monoxide-substrate-cytochrome P-450CAM ternary complex.

Authors:  R Raag; T L Poulos
Journal:  Biochemistry       Date:  1989-09-19       Impact factor: 3.162

8.  Redox-dependent conformational selection in a Cys4Fe2S2 ferredoxin.

Authors:  T C Pochapsky; M Kostic; N Jain; R Pejchal
Journal:  Biochemistry       Date:  2001-05-15       Impact factor: 3.162

9.  A conserved histidine in vertebrate-type ferredoxins is critical for redox-dependent dynamics.

Authors:  Milka Kostic; Rita Bernhardt; Thomas C Pochapsky
Journal:  Biochemistry       Date:  2003-07-15       Impact factor: 3.162

10.  A functional proline switch in cytochrome P450cam.

Authors:  Bo OuYang; Susan Sondej Pochapsky; Marina Dang; Thomas C Pochapsky
Journal:  Structure       Date:  2008-05-29       Impact factor: 5.006

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  13 in total

Review 1.  Conformational plasticity and structure/function relationships in cytochromes P450.

Authors:  Thomas C Pochapsky; Sophia Kazanis; Marina Dang
Journal:  Antioxid Redox Signal       Date:  2010-10       Impact factor: 8.401

2.  Molecular characterization of a class I P450 electron transfer system from Novosphingobium aromaticivorans DSM12444.

Authors:  Wen Yang; Stephen G Bell; Hui Wang; Weihong Zhou; Nicola Hoskins; Alison Dale; Mark Bartlam; Luet-Lok Wong; Zihe Rao
Journal:  J Biol Chem       Date:  2010-06-24       Impact factor: 5.157

3.  Three clusters of conformational states in p450cam reveal a multistep pathway for closing of the substrate access channel.

Authors:  Young-Tae Lee; Edith C Glazer; Richard F Wilson; C David Stout; David B Goodin
Journal:  Biochemistry       Date:  2011-01-11       Impact factor: 3.162

4.  Two-dimensional NMR and all-atom molecular dynamics of cytochrome P450 CYP119 reveal hidden conformational substates.

Authors:  Jed N Lampe; Relly Brandman; Santhosh Sivaramakrishnan; Paul R Ortiz de Montellano
Journal:  J Biol Chem       Date:  2010-01-22       Impact factor: 5.157

Review 5.  Nanodiscs in Membrane Biochemistry and Biophysics.

Authors:  Ilia G Denisov; Stephen G Sligar
Journal:  Chem Rev       Date:  2017-02-08       Impact factor: 60.622

6.  Experimentally restrained molecular dynamics simulations for characterizing the open states of cytochrome P450cam.

Authors:  Eliana K Asciutto; Marina Dang; Susan Sondej Pochapsky; Jeffry D Madura; Thomas C Pochapsky
Journal:  Biochemistry       Date:  2011-02-08       Impact factor: 3.162

7.  Redox state dependence of axial ligand dynamics in Nitrosomonas europaea cytochrome c552.

Authors:  Ravinder Kaur; Kara L Bren
Journal:  J Phys Chem B       Date:  2013-08-20       Impact factor: 2.991

Review 8.  Spectroscopic features of cytochrome P450 reaction intermediates.

Authors:  Abhinav Luthra; Ilia G Denisov; Stephen G Sligar
Journal:  Arch Biochem Biophys       Date:  2010-12-16       Impact factor: 4.013

9.  Solution structural ensembles of substrate-free cytochrome P450(cam).

Authors:  Eliana K Asciutto; Matthew J Young; Jeffry Madura; Susan Sondej Pochapsky; Thomas C Pochapsky
Journal:  Biochemistry       Date:  2012-04-10       Impact factor: 3.162

10.  Functional characterization of cytochromes P450 2B from the desert woodrat Neotoma lepida.

Authors:  P Ross Wilderman; Hyun-Hee Jang; Jael R Malenke; Mariam Salib; Elisabeth Angermeier; Sonia Lamime; M Denise Dearing; James R Halpert
Journal:  Toxicol Appl Pharmacol       Date:  2013-12-19       Impact factor: 4.219

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