Literature DB >> 19364647

A flexizyme that selectively charges amino acids activated by a water-friendly leaving group.

Nobuyoshi Niwa1, Yusuke Yamagishi, Hiroshi Murakami, Hiroaki Suga.   

Abstract

We have developed a new flexizyme (a flexible de novo tRNA acylation ribozyme) system, a pair of amino-derivatized benzyl thioester (ABT) and amino flexizyme (aFx). ABT bearing the ammonium ion was designed to render the acyl-donor substrates better water solubility. Although the previously reported flexizymes (eFx and dFx) did not show acylation activity for the ABT derivatives, a new flexizyme variant aFx, generated by in vitro selection against an amino acid activated ABT, exhibits high selectivity toward those activated ABT. The flexizymes system including aFx, eFx, and dFx enables us to prepare a wide variety of acyl-tRNAs charged with non-proteinogenic amino acids.

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Year:  2009        PMID: 19364647     DOI: 10.1016/j.bmcl.2009.03.114

Source DB:  PubMed          Journal:  Bioorg Med Chem Lett        ISSN: 0960-894X            Impact factor:   2.823


  16 in total

1.  Flexizymes for genetic code reprogramming.

Authors:  Yuki Goto; Takayuki Katoh; Hiroaki Suga
Journal:  Nat Protoc       Date:  2011-05-12       Impact factor: 13.491

2.  The RNA origin of transfer RNA aminoacylation and beyond.

Authors:  Hiroaki Suga; Gosuke Hayashi; Naohiro Terasaka
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-10-27       Impact factor: 6.237

Review 3.  Coding of Class I and II Aminoacyl-tRNA Synthetases.

Authors:  Charles W Carter
Journal:  Adv Exp Med Biol       Date:  2017       Impact factor: 2.622

4.  Tryptophanyl-tRNA synthetase Urzyme: a model to recapitulate molecular evolution and investigate intramolecular complementation.

Authors:  Yen Pham; Brian Kuhlman; Glenn L Butterfoss; Hao Hu; Violetta Weinreb; Charles W Carter
Journal:  J Biol Chem       Date:  2010-09-23       Impact factor: 5.157

5.  An aminoacylation ribozyme evolved from a natural tRNA-sensing T-box riboswitch.

Authors:  Satoshi Ishida; Naohiro Terasaka; Takayuki Katoh; Hiroaki Suga
Journal:  Nat Chem Biol       Date:  2020-03-23       Impact factor: 15.040

6.  Selective desulfurization significantly expands sequence variety of 3'-peptidyl-tRNA mimics obtained by native chemical ligation.

Authors:  Anna-Skrollan Geiermann; Ronald Micura
Journal:  Chembiochem       Date:  2012-07-11       Impact factor: 3.164

Review 7.  Directing evolution of novel ligands by mRNA display.

Authors:  Golnaz Kamalinia; Brian J Grindel; Terry T Takahashi; Steven W Millward; Richard W Roberts
Journal:  Chem Soc Rev       Date:  2021-06-24       Impact factor: 60.615

8.  Expanding the Chemical Diversity of Genetically Encoded Libraries.

Authors:  Sabrina E Iskandar; Victoria A Haberman; Albert A Bowers
Journal:  ACS Comb Sci       Date:  2020-11-09       Impact factor: 3.903

Review 9.  Methods to Make Homogenous Antibody Drug Conjugates.

Authors:  Toni Kline; Alexander R Steiner; Kalyani Penta; Aaron K Sato; Trevor J Hallam; Gang Yin
Journal:  Pharm Res       Date:  2014-12-16       Impact factor: 4.200

10.  The Rodin-Ohno hypothesis that two enzyme superfamilies descended from one ancestral gene: an unlikely scenario for the origins of translation that will not be dismissed.

Authors:  Charles W Carter; Li Li; Violetta Weinreb; Martha Collier; Katiria Gonzalez-Rivera; Mariel Jimenez-Rodriguez; Ozgün Erdogan; Brian Kuhlman; Xavier Ambroggio; Tishan Williams; S Niranj Chandrasekharan
Journal:  Biol Direct       Date:  2014-06-14       Impact factor: 4.540

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