Literature DB >> 19361433

Molecular dynamism of Fe-S cluster biosynthesis implicated by the structure of the SufC(2)-SufD(2) complex.

Kei Wada1, Norika Sumi, Rina Nagai, Kenji Iwasaki, Takayuki Sato, Kei Suzuki, Yuko Hasegawa, Shintaro Kitaoka, Yoshiko Minami, F Wayne Outten, Yasuhiro Takahashi, Keiichi Fukuyama.   

Abstract

Maturation of iron-sulfur (Fe-S) proteins is achieved by the SUF machinery in a wide number of eubacteria and archaea, as well as eukaryotic chloroplasts. This machinery is encoded in Escherichia coli by the sufABCDSE operon, where three Suf components, SufB, SufC, and SufD, form a complex and appear to provide an intermediary site for the Fe-S cluster assembly. Here, we report the quaternary structure of the SufC(2)-SufD(2) complex in which SufC is bound to the C-terminal domain of SufD. Comparison with the monomeric structure of SufC revealed conformational change of the active-site residues: SufC becomes competent for ATP binding and hydrolysis upon association with SufD. The two SufC subunits were spatially separated in the SufC(2)-SufD(2) complex, whereas cross-linking experiments in solution have indicated that two SufC molecules associate with each other in the presence of Mg(2+) and ATP. Such dimer formation of SufC may lead to a gross structural change of the SufC(2)-SufD(2) complex. Furthermore, genetic analysis of SufD revealed an essential histidine residue buried inside the dimer interface, suggesting that conformational change may expose this crucial residue. These findings, together with biochemical characterization of the SufB-SufC-SufD complex, have led us to propose a model for the Fe-S cluster biosynthesis in the complex.

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Year:  2009        PMID: 19361433      PMCID: PMC2744881          DOI: 10.1016/j.jmb.2009.01.054

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  40 in total

1.  An approach to multi-copy search in molecular replacement.

Authors:  A Vagin; A Teplyakov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-12

2.  Structural analysis of a set of proteins resulting from a bacterial genomics project.

Authors:  J Badger; J M Sauder; J M Adams; S Antonysamy; K Bain; M G Bergseid; S G Buchanan; M D Buchanan; Y Batiyenko; J A Christopher; S Emtage; A Eroshkina; I Feil; E B Furlong; K S Gajiwala; X Gao; D He; J Hendle; A Huber; K Hoda; P Kearins; C Kissinger; B Laubert; H A Lewis; J Lin; K Loomis; D Lorimer; G Louie; M Maletic; C D Marsh; I Miller; J Molinari; H J Muller-Dieckmann; J M Newman; B W Noland; B Pagarigan; F Park; T S Peat; K W Post; S Radojicic; A Ramos; R Romero; M E Rutter; W E Sanderson; K D Schwinn; J Tresser; J Winhoven; T A Wright; L Wu; J Xu; T J R Harris
Journal:  Proteins       Date:  2005-09-01

Review 3.  Iron-sulfur cluster biosynthesis in bacteria: Mechanisms of cluster assembly and transfer.

Authors:  Marc Fontecave; Sandrine Ollagnier-de-Choudens
Journal:  Arch Biochem Biophys       Date:  2007-12-28       Impact factor: 4.013

4.  Crystal structure of Escherichia coli SufA involved in biosynthesis of iron-sulfur clusters: implications for a functional dimer.

Authors:  Kei Wada; Yuko Hasegawa; Zhao Gong; Yoshiko Minami; Keiichi Fukuyama; Yasuhiro Takahashi
Journal:  FEBS Lett       Date:  2005-11-15       Impact factor: 4.124

5.  Crystal structure of atypical cytoplasmic ABC-ATPase SufC from Thermus thermophilus HB8.

Authors:  Satoshi Watanabe; Akiko Kita; Kunio Miki
Journal:  J Mol Biol       Date:  2005-09-23       Impact factor: 5.469

6.  The E. coli BtuCD structure: a framework for ABC transporter architecture and mechanism.

Authors:  Kaspar P Locher; Allen T Lee; Douglas C Rees
Journal:  Science       Date:  2002-05-10       Impact factor: 47.728

Review 7.  Biogenesis of iron-sulfur proteins in plants.

Authors:  Janneke Balk; Stéphane Lobréaux
Journal:  Trends Plant Sci       Date:  2005-07       Impact factor: 18.313

8.  A third bacterial system for the assembly of iron-sulfur clusters with homologs in archaea and plastids.

Authors:  Yasuhiro Takahashi; Umechiyo Tokumoto
Journal:  J Biol Chem       Date:  2002-06-27       Impact factor: 5.157

9.  The asymmetric trimeric architecture of [2Fe-2S] IscU: implications for its scaffolding during iron-sulfur cluster biosynthesis.

Authors:  Yoshimitsu Shimomura; Kei Wada; Keiichi Fukuyama; Yasuhiro Takahashi
Journal:  J Mol Biol       Date:  2008-08-13       Impact factor: 5.469

10.  Maximum-likelihood density modification.

Authors:  T C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-08
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  14 in total

1.  SufB intein of Mycobacterium tuberculosis as a sensor for oxidative and nitrosative stresses.

Authors:  Natalya I Topilina; Cathleen M Green; Pradeepa Jayachandran; Danielle S Kelley; Matthew J Stanger; Carol Lyn Piazza; Sasmita Nayak; Marlene Belfort
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-03       Impact factor: 11.205

2.  Functional Dynamics Revealed by the Structure of the SufBCD Complex, a Novel ATP-binding Cassette (ABC) Protein That Serves as a Scaffold for Iron-Sulfur Cluster Biogenesis.

Authors:  Kei Hirabayashi; Eiki Yuda; Naoyuki Tanaka; Sumie Katayama; Kenji Iwasaki; Takashi Matsumoto; Genji Kurisu; F Wayne Outten; Keiichi Fukuyama; Yasuhiro Takahashi; Kei Wada
Journal:  J Biol Chem       Date:  2015-10-15       Impact factor: 5.157

3.  Structural insights of post-translational modification sites in the proteome of Thermus thermophilus.

Authors:  Ryoji Masui; Yoshio Takahata; Masao Inoue; Yota Iio; Hiroki Okanishi; Kwang Kim; Noriko Nakagawa; Kei Yura; Seiki Kuramitsu
Journal:  J Struct Funct Genomics       Date:  2014-01-10

Review 4.  Fe-S cluster biogenesis by the bacterial Suf pathway.

Authors:  Matthew Blahut; Enis Sanchez; Claire E Fisher; F Wayne Outten
Journal:  Biochim Biophys Acta Mol Cell Res       Date:  2020-08-18       Impact factor: 4.739

5.  Separate FeS scaffold and carrier functions for SufB₂C₂ and SufA during in vitro maturation of [2Fe2S] Fdx.

Authors:  Harsimranjit K Chahal; F Wayne Outten
Journal:  J Inorg Biochem       Date:  2012-06-19       Impact factor: 4.155

6.  Iron-sulfur (Fe-S) cluster assembly: the SufBCD complex is a new type of Fe-S scaffold with a flavin redox cofactor.

Authors:  Silke Wollers; Gunhild Layer; Ricardo Garcia-Serres; Luca Signor; Martin Clemancey; Jean-Marc Latour; Marc Fontecave; Sandrine Ollagnier de Choudens
Journal:  J Biol Chem       Date:  2010-05-11       Impact factor: 5.157

Review 7.  Building Fe-S proteins: bacterial strategies.

Authors:  Béatrice Py; Frédéric Barras
Journal:  Nat Rev Microbiol       Date:  2010-06       Impact factor: 60.633

8.  SufD and SufC ATPase activity are required for iron acquisition during in vivo Fe-S cluster formation on SufB.

Authors:  Avneesh Saini; Daphne T Mapolelo; Harsimranjit K Chahal; Michael K Johnson; F Wayne Outten
Journal:  Biochemistry       Date:  2010-11-02       Impact factor: 3.162

Review 9.  The apicomplexan plastid and its evolution.

Authors:  Shigeharu Sato
Journal:  Cell Mol Life Sci       Date:  2011-03-05       Impact factor: 9.261

Review 10.  Interplay between oxygen and Fe-S cluster biogenesis: insights from the Suf pathway.

Authors:  Eric S Boyd; Khaleh M Thomas; Yuyuan Dai; Jeff M Boyd; F Wayne Outten
Journal:  Biochemistry       Date:  2014-09-11       Impact factor: 3.162

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