Literature DB >> 26472926

Functional Dynamics Revealed by the Structure of the SufBCD Complex, a Novel ATP-binding Cassette (ABC) Protein That Serves as a Scaffold for Iron-Sulfur Cluster Biogenesis.

Kei Hirabayashi1, Eiki Yuda2, Naoyuki Tanaka2, Sumie Katayama3, Kenji Iwasaki3, Takashi Matsumoto4, Genji Kurisu3, F Wayne Outten5, Keiichi Fukuyama6, Yasuhiro Takahashi7, Kei Wada8.   

Abstract

ATP-binding cassette (ABC)-type ATPases are chemomechanical engines involved in diverse biological pathways. Recent genomic information reveals that ABC ATPase domains/subunits act not only in ABC transporters and structural maintenance of chromosome proteins, but also in iron-sulfur (Fe-S) cluster biogenesis. A novel type of ABC protein, the SufBCD complex, functions in the biosynthesis of nascent Fe-S clusters in almost all Eubacteria and Archaea, as well as eukaryotic chloroplasts. In this study, we determined the first crystal structure of the Escherichia coli SufBCD complex, which exhibits the common architecture of ABC proteins: two ABC ATPase components (SufC) with function-specific components (SufB-SufD protomers). Biochemical and physiological analyses based on this structure provided critical insights into Fe-S cluster assembly and revealed a dynamic conformational change driven by ABC ATPase activity. We propose a molecular mechanism for the biogenesis of the Fe-S cluster in the SufBCD complex.
© 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  ABC ATPase; ABC transporter; ATPase; Suf machinery; conformational change; iron-sulfur protein; x-ray crystallography

Mesh:

Substances:

Year:  2015        PMID: 26472926      PMCID: PMC4705970          DOI: 10.1074/jbc.M115.680934

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  57 in total

Review 1.  ABC-ATPases, adaptable energy generators fuelling transmembrane movement of a variety of molecules in organisms from bacteria to humans.

Authors:  I B Holland; M A Blight
Journal:  J Mol Biol       Date:  1999-10-22       Impact factor: 5.469

Review 2.  SMC proteins in bacteria: condensation motors for chromosome segregation?

Authors:  P L Graumann
Journal:  Biochimie       Date:  2001-01       Impact factor: 4.079

3.  EMAN: semiautomated software for high-resolution single-particle reconstructions.

Authors:  S J Ludtke; P R Baldwin; W Chiu
Journal:  J Struct Biol       Date:  1999-12-01       Impact factor: 2.867

4.  Structural biology of Rad50 ATPase: ATP-driven conformational control in DNA double-strand break repair and the ABC-ATPase superfamily.

Authors:  K P Hopfner; A Karcher; D S Shin; L Craig; L M Arthur; J P Carney; J A Tainer
Journal:  Cell       Date:  2000-06-23       Impact factor: 41.582

Review 5.  The ABCs of SMC proteins: two-armed ATPases for chromosome condensation, cohesion, and repair.

Authors:  Tatsuya Hirano
Journal:  Genes Dev       Date:  2002-02-15       Impact factor: 11.361

6.  Hyperproduction of recombinant ferredoxins in escherichia coli by coexpression of the ORF1-ORF2-iscS-iscU-iscA-hscB-hs cA-fdx-ORF3 gene cluster.

Authors:  M Nakamura; K Saeki; Y Takahashi
Journal:  J Biochem       Date:  1999-07       Impact factor: 3.387

7.  The E. coli BtuCD structure: a framework for ABC transporter architecture and mechanism.

Authors:  Kaspar P Locher; Allen T Lee; Douglas C Rees
Journal:  Science       Date:  2002-05-10       Impact factor: 47.728

8.  SufC hydrolyzes ATP and interacts with SufB from Thermotoga maritima.

Authors:  K Rangachari; C T Davis; J F Eccleston; E M A Hirst; J W Saldanha; M Strath; R J M Iain Wilson
Journal:  FEBS Lett       Date:  2002-03-13       Impact factor: 4.124

9.  A third bacterial system for the assembly of iron-sulfur clusters with homologs in archaea and plastids.

Authors:  Yasuhiro Takahashi; Umechiyo Tokumoto
Journal:  J Biol Chem       Date:  2002-06-27       Impact factor: 5.157

10.  ATP binding to the motor domain from an ABC transporter drives formation of a nucleotide sandwich dimer.

Authors:  Paul C Smith; Nathan Karpowich; Linda Millen; Jonathan E Moody; Jane Rosen; Philip J Thomas; John F Hunt
Journal:  Mol Cell       Date:  2002-07       Impact factor: 17.970

View more
  18 in total

Review 1.  Fe-S cluster biogenesis by the bacterial Suf pathway.

Authors:  Matthew Blahut; Enis Sanchez; Claire E Fisher; F Wayne Outten
Journal:  Biochim Biophys Acta Mol Cell Res       Date:  2020-08-18       Impact factor: 4.739

2.  The DnaJ proteins DJA6 and DJA5 are essential for chloroplast iron-sulfur cluster biogenesis.

Authors:  Jing Zhang; Zechen Bai; Min Ouyang; Xiumei Xu; Haibo Xiong; Qiang Wang; Bernhard Grimm; Jean-David Rochaix; Lixin Zhang
Journal:  EMBO J       Date:  2021-04-15       Impact factor: 14.012

3.  Mapping the key residues of SufB and SufD essential for biosynthesis of iron-sulfur clusters.

Authors:  Eiki Yuda; Naoyuki Tanaka; Takashi Fujishiro; Nao Yokoyama; Kei Hirabayashi; Keiichi Fukuyama; Kei Wada; Yasuhiro Takahashi
Journal:  Sci Rep       Date:  2017-08-24       Impact factor: 4.379

4.  Insights into Dynamic Polymicrobial Synergy Revealed by Time-Coursed RNA-Seq.

Authors:  Erik L Hendrickson; David A C Beck; Daniel P Miller; Qian Wang; Marvin Whiteley; Richard J Lamont; Murray Hackett
Journal:  Front Microbiol       Date:  2017-02-28       Impact factor: 5.640

5.  Biological and Chemical Adaptation to Endogenous Hydrogen Peroxide Production in Streptococcus pneumoniae D39.

Authors:  John P Lisher; Ho-Ching Tiffany Tsui; Smirla Ramos-Montañez; Kristy L Hentchel; Julia E Martin; Jonathan C Trinidad; Malcolm E Winkler; David P Giedroc
Journal:  mSphere       Date:  2017-01-04       Impact factor: 4.389

6.  Thermal proteome profiling in bacteria: probing protein state in vivo.

Authors:  André Mateus; Jacob Bobonis; Nils Kurzawa; Frank Stein; Dominic Helm; Johannes Hevler; Athanasios Typas; Mikhail M Savitski
Journal:  Mol Syst Biol       Date:  2018-07-06       Impact factor: 11.429

Review 7.  Iron-sulfur clusters biogenesis by the SUF machinery: close to the molecular mechanism understanding.

Authors:  J Pérard; Sandrine Ollagnier de Choudens
Journal:  J Biol Inorg Chem       Date:  2017-12-26       Impact factor: 3.358

8.  The repertoire of ABC proteins in Clostridioides difficile.

Authors:  Methinee Pipatthana; Phurt Harnvoravongchai; Pisut Pongchaikul; Somsak Likhitrattanapisal; Matthew Phanchana; Surang Chankhamhaengdecha; Tavan Janvilisri
Journal:  Comput Struct Biotechnol J       Date:  2021-05-08       Impact factor: 7.271

Review 9.  Ion and metabolite transport in the chloroplast of algae: lessons from land plants.

Authors:  Justine Marchand; Parisa Heydarizadeh; Benoît Schoefs; Cornelia Spetea
Journal:  Cell Mol Life Sci       Date:  2018-03-14       Impact factor: 9.261

Review 10.  Roles and maturation of iron-sulfur proteins in plastids.

Authors:  Jonathan Przybyla-Toscano; Mélanie Roland; Frédéric Gaymard; Jérémy Couturier; Nicolas Rouhier
Journal:  J Biol Inorg Chem       Date:  2018-01-18       Impact factor: 3.358

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.