Literature DB >> 19361179

Solubility and molecular conformations of n-alkane chains in water.

Andrew L Ferguson1, Pablo G Debenedetti, Athanassios Z Panagiotopoulos.   

Abstract

We employ molecular dynamics simulations to study the solubility and molecular conformations of n-alkane chains in water. We find nearly exponential decrease in solubility with carbon number up to n-eicosane (C(20)), and excellent agreement with experiment up to n-dodecane (C(12)). We detect no sharp break in the dependence of the solubility upon carbon number. A free energy landscape analysis of the chain conformations reveals remarkable similarities between the ideal gas and solvated phase landscapes, suggesting that solvated chain conformations are driven primarily by ideal gas statistics. We find no evidence for hydrophobic collapse of n-alkane chains shorter than n-eicosane (C(20)). The primary effect of the solvent is the appearance of a barrier on the order k(B)T, not present in the ideal gas, between the free energy basins corresponding to compact and extended chain conformations, and destabilization of the most extended conformations. Our findings are robust to nontrivial modification of the potential model, suggesting that the absence of strong solvent effects on the free energy landscapes is fundamental to relatively short (<or=20-mer) chains composed of small hydrophobic monomers, and does not depend on the precise nature of the chain interactions.

Entities:  

Year:  2009        PMID: 19361179     DOI: 10.1021/jp811229q

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  15 in total

1.  Intramolecular Interactions Overcome Hydration to Drive the Collapse Transition of Gly15.

Authors:  D Asthagiri; Deepti Karandur; Dheeraj S Tomar; B Montgomery Pettitt
Journal:  J Phys Chem B       Date:  2017-08-21       Impact factor: 2.991

2.  Evaporation rate of water in hydrophobic confinement.

Authors:  Sumit Sharma; Pablo G Debenedetti
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-05       Impact factor: 11.205

3.  Extended surfaces modulate hydrophobic interactions of neighboring solutes.

Authors:  Amish J Patel; Patrick Varilly; Sumanth N Jamadagni; Hari Acharya; Shekhar Garde; David Chandler
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-10       Impact factor: 11.205

4.  Unraveling the hydrophobic effect, one molecule at a time.

Authors:  Shekhar Garde; Amish J Patel
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-28       Impact factor: 11.205

5.  Systematic determination of order parameters for chain dynamics using diffusion maps.

Authors:  Andrew L Ferguson; Athanassios Z Panagiotopoulos; Pablo G Debenedetti; Ioannis G Kevrekidis
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-19       Impact factor: 11.205

6.  Multiscale approach for the construction of equilibrated all-atom models of a poly(ethylene glycol)-based hydrogel.

Authors:  Xianfeng Li; N Sanjeeva Murthy; Matthew L Becker; Robert A Latour
Journal:  Biointerphases       Date:  2016-06-24       Impact factor: 2.456

7.  Importance of Hydrophilic Hydration and Intramolecular Interactions in the Thermodynamics of Helix-Coil Transition and Helix-Helix Assembly in a Deca-Alanine Peptide.

Authors:  Dheeraj S Tomar; Valéry Weber; B Montgomery Pettitt; D Asthagiri
Journal:  J Phys Chem B       Date:  2015-12-22       Impact factor: 2.991

8.  Approaches for calculating solvation free energies and enthalpies demonstrated with an update of the FreeSolv database.

Authors:  Guilherme Duarte Ramos Matos; Daisy Y Kyu; Hannes H Loeffler; John D Chodera; Michael R Shirts; David L Mobley
Journal:  J Chem Eng Data       Date:  2017-04-24       Impact factor: 2.694

Review 9.  Molecular Shape and the Hydrophobic Effect.

Authors:  Matthew B Hillyer; Bruce C Gibb
Journal:  Annu Rev Phys Chem       Date:  2016-05-27       Impact factor: 12.703

10.  Evolution of the Free Energy Landscapes of n-Alkane Guests Bound within Supramolecular Complexes.

Authors:  Busayo D Alagbe; Bruce C Gibb; Henry S Ashbaugh
Journal:  J Phys Chem B       Date:  2021-06-25       Impact factor: 2.991

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