Literature DB >> 19357322

What are next generation innovative therapeutic targets? Clues from genetic, structural, physicochemical, and systems profiles of successful targets.

Feng Zhu1, LianYi Han, ChanJuan Zheng, Bin Xie, Martti T Tammi, ShengYong Yang, YuQuan Wei, YuZong Chen.   

Abstract

Low target discovery rate has been linked to inadequate consideration of multiple factors that collectively contribute to druggability. These factors include sequence, structural, physicochemical, and systems profiles. Methods individually exploring each of these profiles for target identification have been developed, but they have not been collectively used. We evaluated the collective capability of these methods in identifying promising targets from 1019 research targets based on the multiple profiles of up to 348 successful targets. The collective method combining at least three profiles identified 50, 25, 10, and 4% of the 30, 84, 41, and 864 phase III, II, I, and nonclinical trial targets as promising, including eight to nine targets of positive phase III results. This method dropped 89% of the 19 discontinued clinical trial targets and 97% of the 65 targets failed in high-throughput screening or knockout studies. Collective consideration of multiple profiles demonstrated promising potential in identifying innovative targets.

Mesh:

Year:  2009        PMID: 19357322     DOI: 10.1124/jpet.108.149955

Source DB:  PubMed          Journal:  J Pharmacol Exp Ther        ISSN: 0022-3565            Impact factor:   4.030


  16 in total

1.  Update of TTD: Therapeutic Target Database.

Authors:  Feng Zhu; BuCong Han; Pankaj Kumar; XiangHui Liu; XiaoHua Ma; Xiaona Wei; Lu Huang; YangFan Guo; LianYi Han; ChanJuan Zheng; YuZong Chen
Journal:  Nucleic Acids Res       Date:  2009-11-20       Impact factor: 16.971

Review 2.  Alpha-1-adrenergic receptors: targets for agonist drugs to treat heart failure.

Authors:  Brian C Jensen; Timothy D O'Connell; Paul C Simpson
Journal:  J Mol Cell Cardiol       Date:  2010-11-28       Impact factor: 5.000

3.  Protein functional annotation of simultaneously improved stability, accuracy and false discovery rate achieved by a sequence-based deep learning.

Authors:  Jiajun Hong; Yongchao Luo; Yang Zhang; Junbiao Ying; Weiwei Xue; Tian Xie; Lin Tao; Feng Zhu
Journal:  Brief Bioinform       Date:  2020-07-15       Impact factor: 11.622

4.  Identification of novel immune-relevant drug target genes for Alzheimer's Disease by combining ontology inference with network analysis.

Authors:  Zhi-Jie Han; Wei-Wei Xue; Lin Tao; Feng Zhu
Journal:  CNS Neurosci Ther       Date:  2018-08-14       Impact factor: 5.243

5.  Update of PROFEAT: a web server for computing structural and physicochemical features of proteins and peptides from amino acid sequence.

Authors:  H B Rao; F Zhu; G B Yang; Z R Li; Y Z Chen
Journal:  Nucleic Acids Res       Date:  2011-05-23       Impact factor: 16.971

6.  Therapeutic target database update 2012: a resource for facilitating target-oriented drug discovery.

Authors:  Feng Zhu; Zhe Shi; Chu Qin; Lin Tao; Xin Liu; Feng Xu; Li Zhang; Yang Song; Xianghui Liu; Jingxian Zhang; Bucong Han; Peng Zhang; Yuzong Chen
Journal:  Nucleic Acids Res       Date:  2011-09-24       Impact factor: 16.971

7.  Therapeutic target database update 2018: enriched resource for facilitating bench-to-clinic research of targeted therapeutics.

Authors:  Ying Hong Li; Chun Yan Yu; Xiao Xu Li; Peng Zhang; Jing Tang; Qingxia Yang; Tingting Fu; Xiaoyu Zhang; Xuejiao Cui; Gao Tu; Yang Zhang; Shuang Li; Fengyuan Yang; Qiu Sun; Chu Qin; Xian Zeng; Zhe Chen; Yu Zong Chen; Feng Zhu
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971

8.  Assessing the Performances of Protein Function Prediction Algorithms from the Perspectives of Identification Accuracy and False Discovery Rate.

Authors:  Chun Yan Yu; Xiao Xu Li; Hong Yang; Ying Hong Li; Wei Wei Xue; Yu Zong Chen; Lin Tao; Feng Zhu
Journal:  Int J Mol Sci       Date:  2018-01-08       Impact factor: 5.923

9.  Comparison of FDA Approved Kinase Targets to Clinical Trial Ones: Insights from Their System Profiles and Drug-Target Interaction Networks.

Authors:  Jingyu Xu; Panpan Wang; Hong Yang; Jin Zhou; Yinghong Li; Xiaoxu Li; Weiwei Xue; Chunyan Yu; Yubin Tian; Feng Zhu
Journal:  Biomed Res Int       Date:  2016-07-28       Impact factor: 3.411

10.  Therapeutic target database update 2016: enriched resource for bench to clinical drug target and targeted pathway information.

Authors:  Hong Yang; Chu Qin; Ying Hong Li; Lin Tao; Jin Zhou; Chun Yan Yu; Feng Xu; Zhe Chen; Feng Zhu; Yu Zong Chen
Journal:  Nucleic Acids Res       Date:  2015-11-17       Impact factor: 16.971

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