Literature DB >> 19343541

A theoretical model for template-free synthesis of long DNA sequence.

S M Minhaz Ud-Dean1.   

Abstract

This theoretical scheme is intended to formulate a potential method for high fidelity synthesis of Nucleic Acid molecules towards a few thousand bases using an enzyme system. Terminal Deoxyribonucleotidyl Transferase, which adds a nucleotide to the 3'OH end of a Nucleic Acid molecule, may be used in combination with a controlled method for nucleotide addition and degradation, to synthesize a predefined Nucleic Acid sequence. A pH control system is suggested to regulate the sequential activity switching of different enzymes in the synthetic scheme. Current practice of synthetic biology is cumbersome, expensive and often error prone owing to the dependence on the ligation of short oligonucleotides to fabricate functional genetic parts. The projected scheme is likely to render synthetic genomics appreciably convenient and economic by providing longer DNA molecules to start with.

Entities:  

Year:  2009        PMID: 19343541      PMCID: PMC2735642          DOI: 10.1007/s11693-009-9023-x

Source DB:  PubMed          Journal:  Syst Synth Biol        ISSN: 1872-5325


  39 in total

1.  Global transposon mutagenesis and a minimal Mycoplasma genome.

Authors:  C A Hutchison; S N Peterson; S R Gill; R T Cline; O White; C M Fraser; H O Smith; J C Venter
Journal:  Science       Date:  1999-12-10       Impact factor: 47.728

Review 2.  Reconstruction of genetic circuits.

Authors:  David Sprinzak; Michael B Elowitz
Journal:  Nature       Date:  2005-11-24       Impact factor: 49.962

3.  3'-end labeling of DNA with [alpha-32P]cordycepin-5'-triphosphate.

Authors:  C P Tu; S N Cohen
Journal:  Gene       Date:  1980-07       Impact factor: 3.688

4.  Terminal deoxynucleotidyl transferase: characterization of extraction and assay conditions from human and calf tissue.

Authors:  M S Coleman
Journal:  Arch Biochem Biophys       Date:  1977-08       Impact factor: 4.013

5.  Total synthesis of the gene for an alanine transfer ribonucleic acid from yeast.

Authors:  K L Agarwal; H Büchi; M H Caruthers; N Gupta; H G Khorana; K Kleppe; A Kumar; E Ohtsuka; U L Rajbhandary; J H Van de Sande; V Sgaramella; H Weber; T Yamada
Journal:  Nature       Date:  1970-07-04       Impact factor: 49.962

6.  Homopolymeric tailing.

Authors:  W H Eschenfeldt; R S Puskas; S L Berger
Journal:  Methods Enzymol       Date:  1987       Impact factor: 1.600

7.  Synthesis of 8-(2-4 dinitrophenyl 2-6 aminohexyl) amino-adenosine 5' triphosphate: biological properties and potential uses.

Authors:  C Vincent; P Tchen; M Cohen-Solal; P Kourilsky
Journal:  Nucleic Acids Res       Date:  1982-11-11       Impact factor: 16.971

8.  Generation of a bacterium with a 21 amino acid genetic code.

Authors:  Ryan A Mehl; J Christopher Anderson; Stephen W Santoro; Lei Wang; Andrew B Martin; David S King; David M Horn; Peter G Schultz
Journal:  J Am Chem Soc       Date:  2003-01-29       Impact factor: 15.419

9.  Generating a synthetic genome by whole genome assembly: phiX174 bacteriophage from synthetic oligonucleotides.

Authors:  Hamilton O Smith; Clyde A Hutchison; Cynthia Pfannkoch; J Craig Venter
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-02       Impact factor: 11.205

10.  Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome.

Authors:  Daniel G Gibson; Gwynedd A Benders; Cynthia Andrews-Pfannkoch; Evgeniya A Denisova; Holly Baden-Tillson; Jayshree Zaveri; Timothy B Stockwell; Anushka Brownley; David W Thomas; Mikkel A Algire; Chuck Merryman; Lei Young; Vladimir N Noskov; John I Glass; J Craig Venter; Clyde A Hutchison; Hamilton O Smith
Journal:  Science       Date:  2008-01-24       Impact factor: 47.728

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  3 in total

1.  Synthetic biology advances and applications in the biotechnology industry: a perspective.

Authors:  Leonard Katz; Yvonne Y Chen; Ramon Gonzalez; Todd C Peterson; Huimin Zhao; Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2018-06-18       Impact factor: 3.346

2.  A new route to synthetic DNA.

Authors:  Adam Clore
Journal:  Nat Biotechnol       Date:  2018-07-06       Impact factor: 54.908

3.  De novo DNA synthesis using polymerase-nucleotide conjugates.

Authors:  Sebastian Palluk; Daniel H Arlow; Tristan de Rond; Sebastian Barthel; Justine S Kang; Rathin Bector; Hratch M Baghdassarian; Alisa N Truong; Peter W Kim; Anup K Singh; Nathan J Hillson; Jay D Keasling
Journal:  Nat Biotechnol       Date:  2018-06-18       Impact factor: 54.908

  3 in total

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