Literature DB >> 19341625

Histone deacetylase inhibition elicits an evolutionarily conserved self-renewal program in embryonic stem cells.

Carol B Ware1, Linlin Wang, Brigham H Mecham, Lanlan Shen, Angelique M Nelson, Merav Bar, Deepak A Lamba, Derek S Dauphin, Brian Buckingham, Bardia Askari, Raymond Lim, Muneesh Tewari, Stanley M Gartler, Jean-Pierre Issa, Paul Pavlidis, Zhijun Duan, C Anthony Blau.   

Abstract

Recent evidence indicates that mouse and human embryonic stem cells (ESCs) are fixed at different developmental stages, with the former positioned earlier. We show that a narrow concentration of the naturally occurring short-chain fatty acid, sodium butyrate, supports the extensive self-renewal of mouse and human ESCs, while promoting their convergence toward an intermediate stem cell state. In response to butyrate, human ESCs regress to an earlier developmental stage characterized by a gene expression profile resembling that of mouse ESCs, preventing precocious Xist expression while retaining the ability to form complex teratomas in vivo. Other histone deacetylase inhibitors (HDACi) also support human ESC self-renewal. Our results indicate that HDACi can promote ESC self-renewal across species, and demonstrate that ESCs can toggle between alternative states in response to environmental factors.

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Year:  2009        PMID: 19341625      PMCID: PMC2719860          DOI: 10.1016/j.stem.2009.03.001

Source DB:  PubMed          Journal:  Cell Stem Cell        ISSN: 1875-9777            Impact factor:   24.633


  54 in total

1.  Protocol for the fast chromatin immunoprecipitation (ChIP) method.

Authors:  Joel D Nelson; Oleg Denisenko; Karol Bomsztyk
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

2.  Comparative study of mouse and human feeder cells for human embryonic stem cells.

Authors:  Livia Eiselleova; Iveta Peterkova; Jakub Neradil; Iva Slaninova; Ales Hampl; Petr Dvorak
Journal:  Int J Dev Biol       Date:  2008       Impact factor: 2.203

3.  A comparison of NIH-approved human ESC lines.

Authors:  Carol B Ware; Angelique M Nelson; C Anthony Blau
Journal:  Stem Cells       Date:  2006-08-17       Impact factor: 6.277

4.  X-inactivation reveals epigenetic anomalies in most hESC but identifies sublines that initiate as expected.

Authors:  Lisa L Hall; Meg Byron; John Butler; Klaus A Becker; Angel Nelson; Michal Amit; Joseph Itskovitz-Eldor; Janet Stein; Gary Stein; Carol Ware; Jeanne B Lawrence
Journal:  J Cell Physiol       Date:  2008-08       Impact factor: 6.384

5.  New cell lines from mouse epiblast share defining features with human embryonic stem cells.

Authors:  Paul J Tesar; Josh G Chenoweth; Frances A Brook; Timothy J Davies; Edward P Evans; David L Mack; Richard L Gardner; Ronald D G McKay
Journal:  Nature       Date:  2007-06-27       Impact factor: 49.962

6.  An embryonic stem cell-like gene expression signature in poorly differentiated aggressive human tumors.

Authors:  Ittai Ben-Porath; Matthew W Thomson; Vincent J Carey; Ruping Ge; George W Bell; Aviv Regev; Robert A Weinberg
Journal:  Nat Genet       Date:  2008-05       Impact factor: 38.330

7.  Butyrate mediates decrease of histone acetylation centered on transcription start sites and down-regulation of associated genes.

Authors:  Alvaro Rada-Iglesias; Stefan Enroth; Adam Ameur; Christoph M Koch; Gayle K Clelland; Patricia Respuela-Alonso; Sarah Wilcox; Oliver M Dovey; Peter D Ellis; Cordelia F Langford; Ian Dunham; Jan Komorowski; Claes Wadelius
Journal:  Genome Res       Date:  2007-06       Impact factor: 9.043

8.  Mbd3, a component of the NuRD co-repressor complex, is required for development of pluripotent cells.

Authors:  Keisuke Kaji; Jennifer Nichols; Brian Hendrich
Journal:  Development       Date:  2007-02-07       Impact factor: 6.868

9.  Characterization of human embryonic stem cell lines by the International Stem Cell Initiative.

Authors:  Oluseun Adewumi; Behrouz Aflatoonian; Lars Ahrlund-Richter; Michal Amit; Peter W Andrews; Gemma Beighton; Paul A Bello; Nissim Benvenisty; Lorraine S Berry; Simon Bevan; Barak Blum; Justin Brooking; Kevin G Chen; Andre B H Choo; Gary A Churchill; Marie Corbel; Ivan Damjanov; Jon S Draper; Petr Dvorak; Katarina Emanuelsson; Roland A Fleck; Angela Ford; Karin Gertow; Marina Gertsenstein; Paul J Gokhale; Rebecca S Hamilton; Ales Hampl; Lyn E Healy; Outi Hovatta; Johan Hyllner; Marta P Imreh; Joseph Itskovitz-Eldor; Jamie Jackson; Jacqueline L Johnson; Mark Jones; Kehkooi Kee; Benjamin L King; Barbara B Knowles; Majlinda Lako; Franck Lebrin; Barbara S Mallon; Daisy Manning; Yoav Mayshar; Ronald D G McKay; Anna E Michalska; Milla Mikkola; Masha Mileikovsky; Stephen L Minger; Harry D Moore; Christine L Mummery; Andras Nagy; Norio Nakatsuji; Carmel M O'Brien; Steve K W Oh; Cia Olsson; Timo Otonkoski; Kye-Yoon Park; Robert Passier; Hema Patel; Minal Patel; Roger Pedersen; Martin F Pera; Marian S Piekarczyk; Renee A Reijo Pera; Benjamin E Reubinoff; Allan J Robins; Janet Rossant; Peter Rugg-Gunn; Thomas C Schulz; Henrik Semb; Eric S Sherrer; Henrike Siemen; Glyn N Stacey; Miodrag Stojkovic; Hirofumi Suemori; Jin Szatkiewicz; Tikva Turetsky; Timo Tuuri; Steineke van den Brink; Kristina Vintersten; Sanna Vuoristo; Dorien Ward; Thomas A Weaver; Lesley A Young; Weidong Zhang
Journal:  Nat Biotechnol       Date:  2007-06-17       Impact factor: 54.908

10.  Derivation of pluripotent epiblast stem cells from mammalian embryos.

Authors:  I Gabrielle M Brons; Lucy E Smithers; Matthew W B Trotter; Peter Rugg-Gunn; Bowen Sun; Susana M Chuva de Sousa Lopes; Sarah K Howlett; Amanda Clarkson; Lars Ahrlund-Richter; Roger A Pedersen; Ludovic Vallier
Journal:  Nature       Date:  2007-06-27       Impact factor: 49.962

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  77 in total

1.  H3K9 histone acetylation predicts pluripotency and reprogramming capacity of ES cells.

Authors:  Hadas Hezroni; Itai Tzchori; Anna Davidi; Anna Mattout; Alva Biran; Malka Nissim-Rafinia; Heiner Westphal; Eran Meshorer
Journal:  Nucleus       Date:  2011-07-01       Impact factor: 4.197

2.  Somatic nucleus reprogramming is significantly improved by m-carboxycinnamic acid bishydroxamide, a histone deacetylase inhibitor.

Authors:  Xiangpeng Dai; Jie Hao; Xiao-Jun Hou; Tang Hai; Yong Fan; Yang Yu; Alice Jouneau; Liu Wang; Qi Zhou
Journal:  J Biol Chem       Date:  2010-06-21       Impact factor: 5.157

Review 3.  Solving the "X" in embryos and stem cells.

Authors:  Pablo Bermejo-Alvarez; Priscila Ramos-Ibeas; Alfonso Gutierrez-Adan
Journal:  Stem Cells Dev       Date:  2012-03-06       Impact factor: 3.272

4.  Female human iPSCs retain an inactive X chromosome.

Authors:  Jason Tchieu; Edward Kuoy; Mark H Chin; Hung Trinh; Michaela Patterson; Sean P Sherman; Otaren Aimiuwu; Anne Lindgren; Shahrad Hakimian; Jerome A Zack; Amander T Clark; April D Pyle; William E Lowry; Kathrin Plath
Journal:  Cell Stem Cell       Date:  2010-08-19       Impact factor: 24.633

5.  Derivation conditions impact X-inactivation status in female human induced pluripotent stem cells.

Authors:  Kiichiro Tomoda; Kazutoshi Takahashi; Karen Leung; Aki Okada; Megumi Narita; N Alice Yamada; Kirsten E Eilertson; Peter Tsang; Shiro Baba; Mark P White; Salma Sami; Deepak Srivastava; Bruce R Conklin; Barbara Panning; Shinya Yamanaka
Journal:  Cell Stem Cell       Date:  2012-07-06       Impact factor: 24.633

6.  Molecular signatures of human induced pluripotent stem cells highlight sex differences and cancer genes.

Authors:  Montserrat C Anguera; Ruslan Sadreyev; Zhaoqing Zhang; Attila Szanto; Bernhard Payer; Steven D Sheridan; Showming Kwok; Stephen J Haggarty; Mriganka Sur; Jason Alvarez; Alexander Gimelbrant; Maisam Mitalipova; James E Kirby; Jeannie T Lee
Journal:  Cell Stem Cell       Date:  2012-07-06       Impact factor: 24.633

7.  Reestablishment of the inactive X chromosome to the ground state through cell fusion-induced reprogramming.

Authors:  Hyun Woo Choi; Jong Soo Kim; Hyo Jin Jang; Sol Choi; Jae-Hwan Kim; Hans R Schöler; Jeong Tae Do
Journal:  Cell Mol Life Sci       Date:  2012-11-08       Impact factor: 9.261

Review 8.  Epigenetic regulation of early neural fate commitment.

Authors:  Yunbo Qiao; Xianfa Yang; Naihe Jing
Journal:  Cell Mol Life Sci       Date:  2016-01-22       Impact factor: 9.261

Review 9.  Concise Review: Lessons from Naïve Human Pluripotent Cells.

Authors:  Carol B Ware
Journal:  Stem Cells       Date:  2016-11-10       Impact factor: 6.277

Review 10.  Epigenetics of reprogramming to induced pluripotency.

Authors:  Bernadett Papp; Kathrin Plath
Journal:  Cell       Date:  2013-03-14       Impact factor: 41.582

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