Literature DB >> 23498940

Epigenetics of reprogramming to induced pluripotency.

Bernadett Papp1, Kathrin Plath.   

Abstract

Reprogramming to induced pluripotent stem cells (iPSCs) proceeds in a stepwise manner with reprogramming factor binding, transcription, and chromatin states changing during transitions. Evidence is emerging that epigenetic priming events early in the process may be critical for pluripotency induction later. Chromatin and its regulators are important controllers of reprogramming, and reprogramming factor levels, stoichiometry, and extracellular conditions influence the outcome. The rapid progress in characterizing reprogramming is benefiting applications of iPSCs and is already enabling the rational design of novel reprogramming factor cocktails. However, recent studies have also uncovered an epigenetic instability of the X chromosome in human iPSCs that warrants careful consideration.
Copyright © 2013 Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23498940      PMCID: PMC3602907          DOI: 10.1016/j.cell.2013.02.043

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  140 in total

1.  Bypassing the requirements for epigenetic modifications in gene transcription by increasing enhancer strength.

Authors:  George Koutroubas; Menie Merika; Dimitris Thanos
Journal:  Mol Cell Biol       Date:  2007-11-19       Impact factor: 4.272

2.  Optimal reprogramming factor stoichiometry increases colony numbers and affects molecular characteristics of murine induced pluripotent stem cells.

Authors:  Ulf Tiemann; Malte Sgodda; Eva Warlich; Matthias Ballmaier; Hans R Schöler; Axel Schambach; Tobias Cantz
Journal:  Cytometry A       Date:  2011-05-04       Impact factor: 4.355

3.  Rational optimization of reprogramming culture conditions for the generation of induced pluripotent stem cells with ultra-high efficiency and fast kinetics.

Authors:  Jiekai Chen; Jing Liu; You Chen; Jiaqi Yang; Jing Chen; He Liu; Xiangjie Zhao; Kunlun Mo; Hong Song; Lin Guo; Shilong Chu; Deping Wang; Ke Ding; Duanqing Pei
Journal:  Cell Res       Date:  2011-03-29       Impact factor: 25.617

4.  De novo DNA methylation by Dnmt3a and Dnmt3b is dispensable for nuclear reprogramming of somatic cells to a pluripotent state.

Authors:  Mathias Pawlak; Rudolf Jaenisch
Journal:  Genes Dev       Date:  2011-05-15       Impact factor: 11.361

5.  Eutherian mammals use diverse strategies to initiate X-chromosome inactivation during development.

Authors:  Ikuhiro Okamoto; Catherine Patrat; Dominique Thépot; Nathalie Peynot; Patricia Fauque; Nathalie Daniel; Patricia Diabangouaya; Jean-Philippe Wolf; Jean-Paul Renard; Véronique Duranthon; Edith Heard
Journal:  Nature       Date:  2011-04-06       Impact factor: 49.962

6.  Isolation of MECP2-null Rett Syndrome patient hiPS cells and isogenic controls through X-chromosome inactivation.

Authors:  Aaron Y L Cheung; Lindsay M Horvath; Daria Grafodatskaya; Peter Pasceri; Rosanna Weksberg; Akitsu Hotta; Laura Carrel; James Ellis
Journal:  Hum Mol Genet       Date:  2011-03-03       Impact factor: 6.150

7.  Generation of germline-competent induced pluripotent stem cells.

Authors:  Keisuke Okita; Tomoko Ichisaka; Shinya Yamanaka
Journal:  Nature       Date:  2007-06-06       Impact factor: 49.962

8.  In vitro reprogramming of fibroblasts into a pluripotent ES-cell-like state.

Authors:  Marius Wernig; Alexander Meissner; Ruth Foreman; Tobias Brambrink; Manching Ku; Konrad Hochedlinger; Bradley E Bernstein; Rudolf Jaenisch
Journal:  Nature       Date:  2007-06-06       Impact factor: 49.962

9.  Generation of induced pluripotent stem cells without Myc from mouse and human fibroblasts.

Authors:  Masato Nakagawa; Michiyo Koyanagi; Koji Tanabe; Kazutoshi Takahashi; Tomoko Ichisaka; Takashi Aoi; Keisuke Okita; Yuji Mochiduki; Nanako Takizawa; Shinya Yamanaka
Journal:  Nat Biotechnol       Date:  2007-11-30       Impact factor: 54.908

10.  Histone variant macroH2A confers resistance to nuclear reprogramming.

Authors:  Vincent Pasque; Astrid Gillich; Nigel Garrett; John B Gurdon
Journal:  EMBO J       Date:  2011-05-06       Impact factor: 11.598

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  134 in total

1.  Small Molecules Efficiently Reprogram Human Astroglial Cells into Functional Neurons.

Authors:  Lei Zhang; Jiu-Chao Yin; Hana Yeh; Ning-Xin Ma; Grace Lee; Xiangyun Amy Chen; Yanming Wang; Li Lin; Li Chen; Peng Jin; Gang-Yi Wu; Gong Chen
Journal:  Cell Stem Cell       Date:  2015-10-17       Impact factor: 24.633

2.  Accelerated direct reprogramming of fibroblasts into cardiomyocyte-like cells with the MyoD transactivation domain.

Authors:  Hiroyuki Hirai; Nobuko Katoku-Kikyo; Susan A Keirstead; Nobuaki Kikyo
Journal:  Cardiovasc Res       Date:  2013-06-20       Impact factor: 10.787

3.  Micro- and nanofluidic technologies for epigenetic profiling.

Authors:  Toshiki Matsuoka; Byoung Choul Kim; Christopher Moraes; Minsub Han; Shuichi Takayama
Journal:  Biomicrofluidics       Date:  2013-07-24       Impact factor: 2.800

4.  Generation of CD44 gene-deficient mouse derived induced pluripotent stem cells: CD44 gene-deficient iPSCs.

Authors:  Zhenwei Song; Qianqian Ji; Haijing Zhao; Yu Nie; Zuyong He; Yaosheng Chen; Peiqing Cong
Journal:  In Vitro Cell Dev Biol Anim       Date:  2014-06-21       Impact factor: 2.416

5.  Stem Cell Surface Marker Expression Defines Late Stages of Reprogramming to Pluripotency in Human Fibroblasts.

Authors:  Jordan E Pomeroy; Shelley R Hough; Kathryn C Davidson; Alex M Quaas; Jordan A Rees; Martin F Pera
Journal:  Stem Cells Transl Med       Date:  2016-05-09       Impact factor: 6.940

6.  In vitro reprogramming of rat bmMSCs into pancreatic endocrine-like cells.

Authors:  Hong-Tu Li; Fang-Xu Jiang; Ping Shi; Tao Zhang; Xiao-Yu Liu; Xue-Wen Lin; Zhong-Yan San; Xi-Ning Pang
Journal:  In Vitro Cell Dev Biol Anim       Date:  2016-10-03       Impact factor: 2.416

7.  Demethylation of ERECTA receptor genes by IBM1 histone demethylase affects stomatal development.

Authors:  Yuhua Wang; Xueyi Xue; Jian-Kang Zhu; Juan Dong
Journal:  Development       Date:  2016-10-03       Impact factor: 6.868

8.  Re-patterning of H3K27me3, H3K4me3 and DNA methylation during fibroblast conversion into induced cardiomyocytes.

Authors:  Ziqing Liu; Olivia Chen; Michael Zheng; Li Wang; Yang Zhou; Chaoying Yin; Jiandong Liu; Li Qian
Journal:  Stem Cell Res       Date:  2016-02-27       Impact factor: 2.020

9.  Xist deficiency and disorders of X-inactivation in rabbit embryonic stem cells can be rescued by transcription-factor-mediated conversion.

Authors:  Yonghua Jiang; Zhaohui Kou; Tong Wu; Weidong An; Ran Zhou; Hong Wang; Yawei Gao; Shaorong Gao
Journal:  Stem Cells Dev       Date:  2014-06-26       Impact factor: 3.272

10.  Influence of donor age on induced pluripotent stem cells.

Authors:  Valentina Lo Sardo; William Ferguson; Galina A Erikson; Eric J Topol; Kristin K Baldwin; Ali Torkamani
Journal:  Nat Biotechnol       Date:  2016-12-12       Impact factor: 54.908

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