Literature DB >> 19336293

Image-driven population analysis through mixture modeling.

Mert R Sabuncu1, Serdar K Balci, Martha E Shenton, Polina Golland.   

Abstract

We present iCluster, a fast and efficient algorithm that clusters a set of images while co-registering them using a parameterized, nonlinear transformation model. The output of the algorithm is a small number of template images that represent different modes in a population. This is in contrast with traditional, hypothesis-driven computational anatomy approaches that assume a single template to construct an atlas. We derive the algorithm based on a generative model of an image population as a mixture of deformable template images. We validate and explore our method in four experiments. In the first experiment, we use synthetic data to explore the behavior of the algorithm and inform a design choice on parameter settings. In the second experiment, we demonstrate the utility of having multiple atlases for the application of localizing temporal lobe brain structures in a pool of subjects that contains healthy controls and schizophrenia patients. Next, we employ iCluster to partition a data set of 415 whole brain MR volumes of subjects aged 18 through 96 years into three anatomical subgroups. Our analysis suggests that these subgroups mainly correspond to age groups. The templates reveal significant structural differences across these age groups that confirm previous findings in aging research. In the final experiment, we run iCluster on a group of 15 patients with dementia and 15 age-matched healthy controls. The algorithm produces two modes, one of which contains dementia patients only. These results suggest that the algorithm can be used to discover subpopulations that correspond to interesting structural or functional "modes."

Entities:  

Mesh:

Year:  2009        PMID: 19336293      PMCID: PMC2832589          DOI: 10.1109/TMI.2009.2017942

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  41 in total

1.  Volumetry of hippocampus and amygdala with high-resolution MRI and three-dimensional analysis software: minimizing the discrepancies between laboratories.

Authors:  J C Pruessner; L M Li; W Serles; M Pruessner; D L Collins; N Kabani; S Lupien; A C Evans
Journal:  Cereb Cortex       Date:  2000-04       Impact factor: 5.357

Review 2.  Voxel-based morphometry--the methods.

Authors:  J Ashburner; K J Friston
Journal:  Neuroimage       Date:  2000-06       Impact factor: 6.556

3.  Mathematical/computational challenges in creating deformable and probabilistic atlases of the human brain.

Authors:  P M Thompson; R P Woods; M S Mega; A W Toga
Journal:  Hum Brain Mapp       Date:  2000-02       Impact factor: 5.038

4.  Nonrigid registration using free-form deformations: application to breast MR images.

Authors:  D Rueckert; L I Sonoda; C Hayes; D L Hill; M O Leach; D J Hawkes
Journal:  IEEE Trans Med Imaging       Date:  1999-08       Impact factor: 10.048

5.  A stability based method for discovering structure in clustered data.

Authors:  Asa Ben-Hur; Andre Elisseeff; Isabelle Guyon
Journal:  Pac Symp Biocomput       Date:  2002

6.  Whole brain segmentation: automated labeling of neuroanatomical structures in the human brain.

Authors:  Bruce Fischl; David H Salat; Evelina Busa; Marilyn Albert; Megan Dieterich; Christian Haselgrove; Andre van der Kouwe; Ron Killiany; David Kennedy; Shuna Klaveness; Albert Montillo; Nikos Makris; Bruce Rosen; Anders M Dale
Journal:  Neuron       Date:  2002-01-31       Impact factor: 17.173

7.  A voxel-based morphometric study of ageing in 465 normal adult human brains.

Authors:  C D Good; I S Johnsrude; J Ashburner; R N Henson; K J Friston; R S Frackowiak
Journal:  Neuroimage       Date:  2001-07       Impact factor: 6.556

8.  Voxel-based morphometry using the RAVENS maps: methods and validation using simulated longitudinal atrophy.

Authors:  C Davatzikos; A Genc; D Xu; S M Resnick
Journal:  Neuroimage       Date:  2001-12       Impact factor: 6.556

9.  A longitudinal study of brain morphometrics using quantitative magnetic resonance imaging and difference image analysis.

Authors:  R S N Liu; L Lemieux; G S Bell; S M Sisodiya; S D Shorvon; J W A S Sander; J S Duncan
Journal:  Neuroimage       Date:  2003-09       Impact factor: 6.556

10.  A longitudinal study of brain volume changes in normal aging using serial registered magnetic resonance imaging.

Authors:  Rachael I Scahill; Chris Frost; Rhian Jenkins; Jennifer L Whitwell; Martin N Rossor; Nick C Fox
Journal:  Arch Neurol       Date:  2003-07
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  33 in total

1.  Locally Weighted Multi-atlas Construction.

Authors:  Junning Li; Yonggang Shi; Ivo D Dinov; Arthur W Toga
Journal:  Multimodal Brain Image Anal (2013)       Date:  2013-01-01

2.  Learning task-optimal registration cost functions for localizing cytoarchitecture and function in the cerebral cortex.

Authors:  B T Thomas Yeo; Mert R Sabuncu; Tom Vercauteren; Daphne J Holt; Katrin Amunts; Karl Zilles; Polina Golland; Bruce Fischl
Journal:  IEEE Trans Med Imaging       Date:  2010-06-07       Impact factor: 10.048

3.  Metric optimization for surface analysis in the Laplace-Beltrami embedding space.

Authors:  Yonggang Shi; Rongjie Lai; Danny J J Wang; Daniel Pelletier; David Mohr; Nancy Sicotte; Arthur W Toga
Journal:  IEEE Trans Med Imaging       Date:  2014-03-25       Impact factor: 10.048

4.  Directed graph based image registration.

Authors:  Hongjun Jia; Guorong Wu; Qian Wang; Yaping Wang; Minjeong Kim; Dinggang Shen
Journal:  Comput Med Imaging Graph       Date:  2011-10-19       Impact factor: 4.790

5.  ABSORB: Atlas Building by Self-organized Registration and Bundling.

Authors:  Hongjun Jia; Guorong Wu; Qian Wang; Dinggang Shen
Journal:  Neuroimage       Date:  2010-03-10       Impact factor: 6.556

6.  Feature-based groupwise registration by hierarchical anatomical correspondence detection.

Authors:  Guorong Wu; Qian Wang; Hongjun Jia; Dinggang Shen
Journal:  Hum Brain Mapp       Date:  2011-03-09       Impact factor: 5.038

7.  A novel framework for longitudinal atlas construction with groupwise registration of subject image sequences.

Authors:  Shu Liao; Hongjun Jia; Guorong Wu; Dinggang Shen
Journal:  Neuroimage       Date:  2011-08-22       Impact factor: 6.556

8.  Quantification and Analysis of Large Multimodal Clinical Image Studies: Application to Stroke.

Authors:  Ramesh Sridharan; Adrian V Dalca; Kaitlin M Fitzpatrick; Lisa Cloonan; Allison Kanakis; Ona Wu; Karen L Furie; Jonathan Rosand; Natalia S Rost; Polina Golland
Journal:  Multimodal Brain Image Anal (2013)       Date:  2013

9.  Maximum-margin based representation learning from multiple atlases for Alzheimer's disease classification.

Authors:  Rui Min; Jian Cheng; True Price; Guorong Wu; Dinggang Shen
Journal:  Med Image Comput Comput Assist Interv       Date:  2014

10.  Multiatlas segmentation as nonparametric regression.

Authors:  Suyash P Awate; Ross T Whitaker
Journal:  IEEE Trans Med Imaging       Date:  2014-04-30       Impact factor: 10.048

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