Literature DB >> 19335220

Equation-free multiscale computation: algorithms and applications.

Ioannis G Kevrekidis1, Giovanni Samaey.   

Abstract

In traditional physicochemical modeling, one derives evolution equations at the (macroscopic, coarse) scale of interest; these are used to perform a variety of tasks (simulation, bifurcation analysis, optimization) using an arsenal of analytical and numerical techniques. For many complex systems, however, although one observes evolution at a macroscopic scale of interest, accurate models are only given at a more detailed (fine-scale, microscopic) level of description (e.g., lattice Boltzmann, kinetic Monte Carlo, molecular dynamics). Here, we review a framework for computer-aided multiscale analysis, which enables macroscopic computational tasks (over extended spatiotemporal scales) using only appropriately initialized microscopic simulation on short time and length scales. The methodology bypasses the derivation of macroscopic evolution equations when these equations conceptually exist but are not available in closed form-hence the term equation-free. We selectively discuss basic algorithms and underlying principles and illustrate the approach through representative applications. We also discuss potential difficulties and outline areas for future research.

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Year:  2009        PMID: 19335220     DOI: 10.1146/annurev.physchem.59.032607.093610

Source DB:  PubMed          Journal:  Annu Rev Phys Chem        ISSN: 0066-426X            Impact factor:   12.703


  17 in total

1.  Using Equation-Free Computation to Accelerate Network-Free Stochastic Simulation of Chemical Kinetics.

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Journal:  Drug Dev Res       Date:  2011-02-01       Impact factor: 4.360

4.  Coarse-scale PDEs from fine-scale observations via machine learning.

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Journal:  Chaos       Date:  2020-01       Impact factor: 3.642

5.  Transition Manifolds of Complex Metastable Systems: Theory and Data-Driven Computation of Effective Dynamics.

Authors:  Andreas Bittracher; Péter Koltai; Stefan Klus; Ralf Banisch; Michael Dellnitz; Christof Schütte
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Review 6.  Simulating cancer growth with multiscale agent-based modeling.

Authors:  Zhihui Wang; Joseph D Butner; Romica Kerketta; Vittorio Cristini; Thomas S Deisboeck
Journal:  Semin Cancer Biol       Date:  2014-05-02       Impact factor: 15.707

7.  Dynamic density functional theory of solid tumor growth: Preliminary models.

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8.  Mathematical Oncology: How Are the Mathematical and Physical Sciences Contributing to the War on Breast Cancer?

Authors:  Arnaud H Chauviere; Haralampos Hatzikirou; John S Lowengrub; Hermann B Frieboes; Alastair M Thompson; Vittorio Cristini
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9.  Molecular latent space simulators.

Authors:  Hythem Sidky; Wei Chen; Andrew L Ferguson
Journal:  Chem Sci       Date:  2020-08-26       Impact factor: 9.825

10.  Equation-free analysis of two-component system signalling model reveals the emergence of co-existing phenotypes in the absence of multistationarity.

Authors:  Rebecca B Hoyle; Daniele Avitabile; Andrzej M Kierzek
Journal:  PLoS Comput Biol       Date:  2012-06-28       Impact factor: 4.475

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