Literature DB >> 19332884

Segmental duplications contribute to gene expression differences between humans and chimpanzees.

Ran Blekhman1, Alicia Oshlack, Yoav Gilad.   

Abstract

In addition to specific changes in cis- and trans-regulatory elements, structural changes in the genome are hypothesized to underlie a large number of differences in gene expression between species. Accordingly, we show that species-specific segmental duplications are enriched with genes that are differentially expressed between humans and chimpanzees.

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Mesh：

Year:  2009        PMID： 19332884      PMCID： PMC2691770          DOI： 10.1534/genetics.108.099960

Source DB:  PubMed          Journal:  Genetics        ISSN： 0016-6731            Impact factor:   4.562


  19 in total

Review 1.  Evolution at two levels in humans and chimpanzees.

Authors:  M C King; A C Wilson
Journal:  Science       Date:  1975-04-11       Impact factor: 47.728

2.  Recent segmental duplications in the human genome.

Authors:  Jeffrey A Bailey; Zhiping Gu; Royden A Clark; Knut Reinert; Rhea V Samonte; Stuart Schwartz; Mark D Adams; Eugene W Myers; Peter W Li; Evan E Eichler
Journal:  Science       Date:  2002-08-09       Impact factor: 47.728

3.  Gene regulatory network growth by duplication.

Authors:  Sarah A Teichmann; M Madan Babu
Journal:  Nat Genet       Date:  2004-04-11       Impact factor: 38.330

4.  Divergence of spatial gene expression profiles following species-specific gene duplications in human and mouse.

Authors:  Lukasz Huminiecki; Kenneth H Wolfe
Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043

5.  The origin of subfunctions and modular gene regulation.

Authors:  Allan Force; William A Cresko; F Bryan Pickett; Steven R Proulx; Chris Amemiya; Michael Lynch
Journal:  Genetics       Date:  2005-03-21       Impact factor: 4.562

6.  Transcriptional similarities, dissimilarities, and conservation of cis-elements in duplicated genes of Arabidopsis.

Authors:  Georg Haberer; Tobias Hindemitt; Blake C Meyers; Klaus F X Mayer
Journal:  Plant Physiol       Date:  2004-10       Impact factor: 8.340

7.  Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles.

Authors:  Yoav Gilad; Scott A Rifkin; Paul Bertone; Mark Gerstein; Kevin P White
Journal:  Genome Res       Date:  2005-05       Impact factor: 9.043

8.  Repetitive and non-repetitive DNA sequences and a speculation on the origins of evolutionary novelty.

Authors:  R J Britten; E H Davidson
Journal:  Q Rev Biol       Date:  1971-06       Impact factor: 4.875

9.  Regional patterns of gene expression in human and chimpanzee brains.

Authors:  Philipp Khaitovich; Bjoern Muetzel; Xinwei She; Michael Lachmann; Ines Hellmann; Janko Dietzsch; Stephan Steigele; Hong-Hai Do; Gunter Weiss; Wolfgang Enard; Florian Heissig; Thomas Arendt; Kay Nieselt-Struwe; Evan E Eichler; Svante Pääbo
Journal:  Genome Res       Date:  2004-08       Impact factor: 9.043

10.  Gene regulation in primates evolves under tissue-specific selection pressures.

Authors:  Ran Blekhman; Alicia Oshlack; Adrien E Chabot; Gordon K Smyth; Yoav Gilad
Journal:  PLoS Genet       Date:  2008-11-21       Impact factor: 5.917
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  14 in total

1.  Gene expression differences among primates are associated with changes in a histone epigenetic modification.

Authors:  Carolyn E Cain; Ran Blekhman; John C Marioni; Yoav Gilad
Journal:  Genetics       Date:  2011-02-14       Impact factor: 4.562

2.  Regulatory element copy number differences shape primate expression profiles.

Authors:  Rebecca C Iskow; Omer Gokcumen; Alexej Abyzov; Joanna Malukiewicz; Qihui Zhu; Ann T Sukumar; Athma A Pai; Ryan E Mills; Lukas Habegger; Darren A Cusanovich; Meagan A Rubel; George H Perry; Mark Gerstein; Anne C Stone; Yoav Gilad; Charles Lee
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-13       Impact factor: 11.205

3.  Transcriptional variations mediated by an alternative promoter of the FPR3 gene.

Authors:  Hong-Seok Ha; Jae-Won Huh; Jeong-An Gim; Kyudong Han; Heui-Soo Kim
Journal:  Mamm Genome       Date:  2011-06-30       Impact factor: 2.957

4.  Parsimony and likelihood reconstruction of human segmental duplications.

Authors:  Crystal L Kahn; Borislav H Hristov; Benjamin J Raphael
Journal:  Bioinformatics       Date:  2010-09-15       Impact factor: 6.937

Review 5.  Comparative studies of gene regulatory mechanisms.

Authors:  Athma A Pai; Yoav Gilad
Journal:  Curr Opin Genet Dev       Date:  2014-09-16       Impact factor: 5.578

6.  Decoding human gene expression signatures in the brain.

Authors:  Guang-Zhong Wang; Genevieve Konopka
Journal:  Transcription       Date:  2013-05-01

7.  A genome-wide study of DNA methylation patterns and gene expression levels in multiple human and chimpanzee tissues.

Authors:  Athma A Pai; Jordana T Bell; John C Marioni; Jonathan K Pritchard; Yoav Gilad
Journal:  PLoS Genet       Date:  2011-02-24       Impact factor: 5.917

8.  Patterns of cis regulatory variation in diverse human populations.

Authors:  Barbara E Stranger; Stephen B Montgomery; Antigone S Dimas; Leopold Parts; Oliver Stegle; Catherine E Ingle; Magda Sekowska; George Davey Smith; David Evans; Maria Gutierrez-Arcelus; Alkes Price; Towfique Raj; James Nisbett; Alexandra C Nica; Claude Beazley; Richard Durbin; Panos Deloukas; Emmanouil T Dermitzakis
Journal:  PLoS Genet       Date:  2012-04-19       Impact factor: 5.917

9.  Genomic structure and evolution of multigene families: "flowers" on the human genome.

Authors:  Hie Lim Kim; Mineyo Iwase; Takeshi Igawa; Tasuku Nishioka; Satoko Kaneko; Yukako Katsura; Naoyuki Takahata; Yoko Satta
Journal:  Int J Evol Biol       Date:  2012-06-19

10.  Genome-wide analysis of the abiotic stress-related bZIP family in switchgrass.

Authors:  Weiwei Wang; Yongfeng Wang; Shumeng Zhang; Kunliang Xie; Chao Zhang; Yajun Xi; Fengli Sun
Journal:  Mol Biol Rep       Date:  2020-05-31       Impact factor: 2.742
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