Literature DB >> 19329631

Complete genome sequence of Burkholderia glumae BGR1.

JaeYun Lim1, Tae-Ho Lee, Baek Hie Nahm, Yang Do Choi, Minkyun Kim, Ingyu Hwang.   

Abstract

Burkholderia glumae is the causative agent of grain and seedling rot in rice and of bacterial wilt in many field crops. Here, we report the complete genome sequence of B. glumae BGR1 isolated from a diseased rice panicle in Korea.

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Mesh:

Year:  2009        PMID: 19329631      PMCID: PMC2681909          DOI: 10.1128/JB.00349-09

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  10 in total

1.  Artemis: sequence visualization and annotation.

Authors:  K Rutherford; J Parkhill; J Crook; T Horsnell; P Rice; M A Rajandream; B Barrell
Journal:  Bioinformatics       Date:  2000-10       Impact factor: 6.937

2.  Whole-genome disassembly.

Authors:  Phil Green
Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-19       Impact factor: 11.205

3.  Improved microbial gene identification with GLIMMER.

Authors:  A L Delcher; D Harmon; S Kasif; O White; S L Salzberg
Journal:  Nucleic Acids Res       Date:  1999-12-01       Impact factor: 16.971

4.  Consed: a graphical tool for sequence finishing.

Authors:  D Gordon; C Abajian; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

5.  GeneMark.hmm: new solutions for gene finding.

Authors:  A V Lukashin; M Borodovsky
Journal:  Nucleic Acids Res       Date:  1998-02-15       Impact factor: 16.971

Review 6.  A genomic perspective on protein families.

Authors:  R L Tatusov; E V Koonin; D J Lipman
Journal:  Science       Date:  1997-10-24       Impact factor: 47.728

7.  Quorum sensing and the LysR-type transcriptional activator ToxR regulate toxoflavin biosynthesis and transport in Burkholderia glumae.

Authors:  Jinwoo Kim; Jung-Gun Kim; Yongsung Kang; Ji Youn Jang; Geetanjali J Jog; Jae Yun Lim; Suhyun Kim; Hiroaki Suga; Tomohisa Nagamatsu; Ingyu Hwang
Journal:  Mol Microbiol       Date:  2004-11       Impact factor: 3.501

8.  Whole-genome sequence assembly for mammalian genomes: Arachne 2.

Authors:  David B Jaffe; Jonathan Butler; Sante Gnerre; Evan Mauceli; Kerstin Lindblad-Toh; Jill P Mesirov; Michael C Zody; Eric S Lander
Journal:  Genome Res       Date:  2003-01       Impact factor: 9.043

9.  KEGG for linking genomes to life and the environment.

Authors:  Minoru Kanehisa; Michihiro Araki; Susumu Goto; Masahiro Hattori; Mika Hirakawa; Masumi Itoh; Toshiaki Katayama; Shuichi Kawashima; Shujiro Okuda; Toshiaki Tokimatsu; Yoshihiro Yamanishi
Journal:  Nucleic Acids Res       Date:  2007-12-12       Impact factor: 16.971

10.  GenBank.

Authors:  Dennis A Benson; Ilene Karsch-Mizrachi; David J Lipman; James Ostell; David L Wheeler
Journal:  Nucleic Acids Res       Date:  2007-12-11       Impact factor: 16.971

  10 in total
  20 in total

1.  The novel kasugamycin 2'-N-acetyltransferase gene aac(2')-IIa, carried by the IncP island, confers kasugamycin resistance to rice-pathogenic bacteria.

Authors:  Atsushi Yoshii; Hiromitsu Moriyama; Toshiyuki Fukuhara
Journal:  Appl Environ Microbiol       Date:  2012-06-01       Impact factor: 4.792

2.  Genome characterization of a novel Burkholderia cepacia complex genomovar isolated from dieback affected mango orchards.

Authors:  Asifullah Khan; Huma Asif; David J Studholme; Ishtiaq A Khan; M Kamran Azim
Journal:  World J Microbiol Biotechnol       Date:  2013-05-08       Impact factor: 3.312

3.  Phylogeny of replication initiator protein TrfA reveals a highly divergent clade of incompatibility group P1 plasmids.

Authors:  Drake C Stenger; Min Woo Lee
Journal:  Appl Environ Microbiol       Date:  2011-02-04       Impact factor: 4.792

4.  The Siderophore Product Ornibactin Is Required for the Bactericidal Activity of Burkholderia contaminans MS14.

Authors:  Peng Deng; Adam Foxfire; Jianhong Xu; Sonya M Baird; Jiayuan Jia; Keren H Delgado; Ronald Shin; Leif Smith; Shi-En Lu
Journal:  Appl Environ Microbiol       Date:  2017-03-31       Impact factor: 4.792

5.  Interspecific bacterial sensing through airborne signals modulates locomotion and drug resistance.

Authors:  Kwang-sun Kim; Soohyun Lee; Choong-Min Ryu
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

Review 6.  Fungal hemolysins.

Authors:  Ajay P Nayak; Brett J Green; Donald H Beezhold
Journal:  Med Mycol       Date:  2012-07-09       Impact factor: 4.076

7.  Genome-wide RNA sequencing analysis of quorum sensing-controlled regulons in the plant-associated Burkholderia glumae PG1 strain.

Authors:  Rong Gao; Dagmar Krysciak; Katrin Petersen; Christian Utpatel; Andreas Knapp; Christel Schmeisser; Rolf Daniel; Sonja Voget; Karl-Erich Jaeger; Wolfgang R Streit
Journal:  Appl Environ Microbiol       Date:  2015-09-11       Impact factor: 4.792

8.  Comparative genomic analysis of two Burkholderia glumae strains from different geographic origins reveals a high degree of plasticity in genome structure associated with genomic islands.

Authors:  Felix Francis; Joohyun Kim; Thiru Ramaraj; Andrew Farmer; Milton C Rush; Jong Hyun Ham
Journal:  Mol Genet Genomics       Date:  2013-04-06       Impact factor: 3.291

9.  Burkholderia glumae ToxA Is a Dual-Specificity Methyltransferase That Catalyzes the Last Two Steps of Toxoflavin Biosynthesis.

Authors:  Michael K Fenwick; Benjamin Philmus; Tadhg P Begley; Steven E Ealick
Journal:  Biochemistry       Date:  2016-05-03       Impact factor: 3.162

Review 10.  Burkholderia glumae: next major pathogen of rice?

Authors:  Jong Hyun Ham; Rebecca A Melanson; Milton C Rush
Journal:  Mol Plant Pathol       Date:  2010-11-24       Impact factor: 5.663

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