Literature DB >> 19318212

Biologically inspired synthetic enzymes made from DNA.

Kenny Schlosser1, Yingfu Li.   

Abstract

In cells, DNA typically consists of two antiparallel strands arranged in a double-helical structure, which is central to its fundamental role in storing and transmitting genetic information. In laboratories, however, DNA can be readily synthesized as a single-stranded polymer that can adopt many other types of structures, including some that have been shown to catalyze chemical transformations. These catalytic DNA molecules are commonly referred to as DNAzymes, or deoxyribozymes. Thus far, DNAzymes have not been found in cells, but hundreds of structural and functional variations have been created in the laboratory. This alternative catalytic platform has piqued the curiosity of many researchers, including those who seek to exploit them in potential applications ranging from analytical tools to therapeutic agents. In this review, we explore the unconventional role of DNA as a biologically inspired synthetic enzyme.

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Year:  2009        PMID: 19318212     DOI: 10.1016/j.chembiol.2009.01.008

Source DB:  PubMed          Journal:  Chem Biol        ISSN: 1074-5521


  83 in total

1.  Functional compromises among pH tolerance, site specificity, and sequence tolerance for a DNA-hydrolyzing deoxyribozyme.

Authors:  Ying Xiao; Madhavaiah Chandra; Scott K Silverman
Journal:  Biochemistry       Date:  2010-11-09       Impact factor: 3.162

2.  DNA-catalyzed covalent modification of amino acid side chains in tethered and free peptide substrates.

Authors:  On Yi Wong; P I Pradeepkumar; Scott K Silverman
Journal:  Biochemistry       Date:  2011-05-03       Impact factor: 3.162

3.  DNA-catalyzed reactivity of a phosphoramidate functional group and formation of an unusual pyrophosphoramidate linkage.

Authors:  Amit Sachdeva; Scott K Silverman
Journal:  Org Biomol Chem       Date:  2011-11-01       Impact factor: 3.876

4.  DNA-catalyzed serine side chain reactivity and selectivity.

Authors:  Amit Sachdeva; Scott K Silverman
Journal:  Chem Commun (Camb)       Date:  2010-02-25       Impact factor: 6.222

5.  Crystal structure of a DNA catalyst.

Authors:  Almudena Ponce-Salvatierra; Katarzyna Wawrzyniak-Turek; Ulrich Steuerwald; Claudia Höbartner; Vladimir Pena
Journal:  Nature       Date:  2016-01-06       Impact factor: 49.962

6.  Sequence Mutation and Structural Alteration Transform a Noncatalytic DNA Sequence into an Efficient RNA-Cleaving DNAzyme.

Authors:  Laura Chan; Kha Tram; Rachel Gysbers; Jimmy Gu; Yingfu Li
Journal:  J Mol Evol       Date:  2015-11-03       Impact factor: 2.395

7.  Searching for a DNAzyme Version of the Leadzyme.

Authors:  Runjhun Saran; Qingyun Chen; Juewen Liu
Journal:  J Mol Evol       Date:  2015-10-12       Impact factor: 2.395

8.  In vitro selection of metal ion-selective DNAzymes.

Authors:  Hannah E Ihms; Yi Lu
Journal:  Methods Mol Biol       Date:  2012

9.  Covalent tagging of phosphorylated peptides by phosphate-specific deoxyribozymes.

Authors:  Amit Sachdeva; Madhavaiah Chandra; Jagadeeswaran Chandrasekar; Scott K Silverman
Journal:  Chembiochem       Date:  2012-02-07       Impact factor: 3.164

10.  DNA Antenna Tile-Associated Deoxyribozyme Sensor with Improved Sensitivity.

Authors:  Amanda J Cox; Hillary N Bengtson; Yulia V Gerasimova; Kyle H Rohde; Dmitry M Kolpashchikov
Journal:  Chembiochem       Date:  2016-09-13       Impact factor: 3.164

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