Literature DB >> 19318211

Frameworks for programming biological function through RNA parts and devices.

Maung Nyan Win1, Joe C Liang, Christina D Smolke.   

Abstract

One of the long-term goals of synthetic biology is to reliably engineer biological systems that perform human-defined functions. Currently, researchers face several scientific and technical challenges in designing and building biological systems, one of which is associated with our limited ability to access, transmit, and control molecular information through the design of functional biomolecules exhibiting novel properties. The fields of RNA biology and nucleic acid engineering, along with the tremendous interdisciplinary growth of synthetic biology, are fueling advances in the emerging field of RNA programming in living systems. Researchers are designing functional RNA molecules that exhibit increasingly complex functions and integrating these molecules into cellular circuits to program higher-level biological functions. The continued integration and growth of RNA design and synthetic biology presents exciting potential to transform how we interact with and program biology.

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Year:  2009        PMID: 19318211      PMCID: PMC2713350          DOI: 10.1016/j.chembiol.2009.02.011

Source DB:  PubMed          Journal:  Chem Biol        ISSN: 1074-5521


  124 in total

Review 1.  Alternative pre-mRNA splicing and proteome expansion in metazoans.

Authors:  Tom Maniatis; Bosiljka Tasic
Journal:  Nature       Date:  2002-07-11       Impact factor: 49.962

Review 2.  Gene regulation by riboswitches.

Authors:  Maumita Mandal; Ronald R Breaker
Journal:  Nat Rev Mol Cell Biol       Date:  2004-06       Impact factor: 94.444

3.  RNase III-mediated silencing of a glucose-dependent repressor in yeast.

Authors:  Dongling Ge; Bruno Lamontagne; Sherif Abou Elela
Journal:  Curr Biol       Date:  2005-01-26       Impact factor: 10.834

4.  Nonequilibrium capillary electrophoresis of equilibrium mixtures: a universal tool for development of aptamers.

Authors:  Maxim Berezovski; Andrei Drabovich; Svetlana M Krylova; Michael Musheev; Victor Okhonin; Alexander Petrov; Sergey N Krylov
Journal:  J Am Chem Soc       Date:  2005-03-09       Impact factor: 15.419

Review 5.  Forty years of in vitro evolution.

Authors:  Gerald F Joyce
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

6.  Improved aptazyme design and in vivo screening enable riboswitching in bacteria.

Authors:  Markus Wieland; Jörg S Hartig
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

7.  Controlling gene expression in living cells through small molecule-RNA interactions.

Authors:  G Werstuck; M R Green
Journal:  Science       Date:  1998-10-09       Impact factor: 47.728

8.  Cell type-specific delivery of siRNAs with aptamer-siRNA chimeras.

Authors:  James O McNamara; Eran R Andrechek; Yong Wang; Kristi D Viles; Rachel E Rempel; Eli Gilboa; Bruce A Sullenger; Paloma H Giangrande
Journal:  Nat Biotechnol       Date:  2006-06-25       Impact factor: 54.908

9.  Selected classes of minimised hammerhead ribozyme have very high cleavage rates at low Mg2+ concentration.

Authors:  J Conaty; P Hendry; T Lockett
Journal:  Nucleic Acids Res       Date:  1999-06-01       Impact factor: 16.971

10.  Recognition of a conserved class of RNA tetraloops by Saccharomyces cerevisiae RNase III.

Authors:  G Chanfreau; M Buckle; A Jacquier
Journal:  Proc Natl Acad Sci U S A       Date:  2000-03-28       Impact factor: 11.205

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  43 in total

Review 1.  Bacterial RNA thermometers: molecular zippers and switches.

Authors:  Jens Kortmann; Franz Narberhaus
Journal:  Nat Rev Microbiol       Date:  2012-03-16       Impact factor: 60.633

2.  Toward atomic accuracy in RNA design.

Authors:  Eric Westhof
Journal:  Nat Methods       Date:  2010-04       Impact factor: 28.547

3.  Assembly and activation of a kinase ribozyme.

Authors:  Donald H Burke; Steven S Rhee
Journal:  RNA       Date:  2010-10-08       Impact factor: 4.942

4.  Ligand-induced conformational capture of a synthetic tetracycline riboswitch revealed by pulse EPR.

Authors:  Dorith Wunnicke; Denise Strohbach; Julia E Weigand; Bettina Appel; Emiliano Feresin; Beatrix Suess; Sabine Müller; Heinz-Jürgen Steinhoff
Journal:  RNA       Date:  2010-11-19       Impact factor: 4.942

5.  Synthetic translational regulation by an L7Ae-kink-turn RNP switch.

Authors:  Hirohide Saito; Tetsuhiro Kobayashi; Tomoaki Hara; Yoshihiko Fujita; Karin Hayashi; Rie Furushima; Tan Inoue
Journal:  Nat Chem Biol       Date:  2009-12-13       Impact factor: 15.040

6.  Versatile RNA-sensing transcriptional regulators for engineering genetic networks.

Authors:  Julius B Lucks; Lei Qi; Vivek K Mutalik; Denise Wang; Adam P Arkin
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-09       Impact factor: 11.205

7.  DNA as a universal substrate for chemical kinetics.

Authors:  David Soloveichik; Georg Seelig; Erik Winfree
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-04       Impact factor: 11.205

8.  Self-assembling RNA square.

Authors:  Sergey M Dibrov; Jaime McLean; Jerod Parsons; Thomas Hermann
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-04       Impact factor: 11.205

Review 9.  Strategies for protein synthetic biology.

Authors:  Raik Grünberg; Luis Serrano
Journal:  Nucleic Acids Res       Date:  2010-04-12       Impact factor: 16.971

Review 10.  Toward engineering synthetic microbial metabolism.

Authors:  George H McArthur; Stephen S Fong
Journal:  J Biomed Biotechnol       Date:  2009-12-14
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