Literature DB >> 19309158

Electrostatic control of the photoisomerization efficiency and optical properties in visual pigments: on the role of counterion quenching.

Gaia Tomasello1, Gloria Olaso-González, Piero Altoè, Marco Stenta, Luis Serrano-Andrés, Manuela Merchán, Giorgio Orlandi, Andrea Bottoni, Marco Garavelli.   

Abstract

Hybrid QM(CASPT2//CASSCF/6-31G*)/MM(Amber) computations have been used to map the photoisomerization path of the retinal chromophore in Rhodopsin and explore the reasons behind the photoactivity efficiency and spectral control in the visual pigments. It is shown that while the electrostatic environment plays a central role in properly tuning the optical properties of the chromophore, it is also critical in biasing the ultrafast photochemical event: it controls the slope of the photoisomerization channel as well as the accessibility of the S(1)/S(0) crossing space triggering the ultrafast decay. The roles of the E113 counterion, the E181 residue, and the other amino acids of the protein pocket are explicitly analyzed: it appears that counterion quenching by the protein environment plays a key role in setting up the chromophore's optical properties and its photochemical efficiency. A unified scenario is presented that discloses the relationship between spectroscopic and mechanistic properties in rhodopsins and allows us to draw a solid mechanism for spectral tuning in color vision pigments: a tunable counterion shielding appears as the elective mechanism for L<-->M spectral modulation, while a retinal conformational control must dictate S absorption. Finally, it is suggested that this model may contribute to shed new light into mutations-related vision deficiencies that opens innovative perspectives for experimental biomolecular investigations in this field.

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Year:  2009        PMID: 19309158     DOI: 10.1021/ja808424b

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  15 in total

1.  Aborted double bicycle-pedal isomerization with hydrogen bond breaking is the primary event of bacteriorhodopsin proton pumping.

Authors:  Piero Altoè; Alessandro Cembran; Massimo Olivucci; Marco Garavelli
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-03       Impact factor: 11.205

Review 2.  Microbial and animal rhodopsins: structures, functions, and molecular mechanisms.

Authors:  Oliver P Ernst; David T Lodowski; Marcus Elstner; Peter Hegemann; Leonid S Brown; Hideki Kandori
Journal:  Chem Rev       Date:  2013-12-23       Impact factor: 60.622

3.  Low-Temperature Trapping of Photointermediates of the Rhodopsin E181Q Mutant.

Authors:  Megan N Sandberg; Jordan A Greco; Nicole L Wagner; Tabitha L Amora; Lavoisier A Ramos; Min-Hsuan Chen; Barry E Knox; Robert R Birge
Journal:  SOJ Biochem       Date:  2014

Review 4.  Quantum Mechanical and Molecular Mechanics Modeling of Membrane-Embedded Rhodopsins.

Authors:  Mikhail N Ryazantsev; Dmitrii M Nikolaev; Andrey V Struts; Michael F Brown
Journal:  J Membr Biol       Date:  2019-09-30       Impact factor: 1.843

5.  Re-evaluation of rhodopsin's relaxation kinetics determined from femtosecond stimulated Raman lineshapes.

Authors:  David W McCamant
Journal:  J Phys Chem B       Date:  2011-06-29       Impact factor: 2.991

6.  Conical intersection dynamics of the primary photoisomerization event in vision.

Authors:  Dario Polli; Piero Altoè; Oliver Weingart; Katelyn M Spillane; Cristian Manzoni; Daniele Brida; Gaia Tomasello; Giorgio Orlandi; Philipp Kukura; Richard A Mathies; Marco Garavelli; Giulio Cerullo
Journal:  Nature       Date:  2010-09-23       Impact factor: 49.962

7.  Glutamic acid 181 is negatively charged in the bathorhodopsin photointermediate of visual rhodopsin.

Authors:  Megan N Sandberg; Tabitha L Amora; Lavoisier S Ramos; Min-Hsuan Chen; Barry E Knox; Robert R Birge
Journal:  J Am Chem Soc       Date:  2011-02-14       Impact factor: 15.419

8.  Quantum mechanical/molecular mechanical structure, enantioselectivity, and spectroscopy of hydroxyretinals and insights into the evolution of color vision in small white butterflies.

Authors:  Sivakumar Sekharan; Shozo Yokoyama; Keiji Morokuma
Journal:  J Phys Chem B       Date:  2011-12-06       Impact factor: 2.991

9.  QM/MM study of the structure, energy storage, and origin of the bathochromic shift in vertebrate and invertebrate bathorhodopsins.

Authors:  Sivakumar Sekharan; Keiji Morokuma
Journal:  J Am Chem Soc       Date:  2011-03-10       Impact factor: 15.419

10.  Color tuning in short wavelength-sensitive human and mouse visual pigments: ab initio quantum mechanics/molecular mechanics studies.

Authors:  Ahmet Altun; Shozo Yokoyama; Keiji Morokuma
Journal:  J Phys Chem A       Date:  2009-10-29       Impact factor: 2.781

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