Literature DB >> 22087641

Quantum mechanical/molecular mechanical structure, enantioselectivity, and spectroscopy of hydroxyretinals and insights into the evolution of color vision in small white butterflies.

Sivakumar Sekharan1, Shozo Yokoyama, Keiji Morokuma.   

Abstract

Since Vogt's discovery of A(3)-retinal or 3-hydroxyretinal in insects in 1983 and Matsui's discovery of A(4)-retinal or 4-hydroxyretinal in firefly squid in 1988, hydroxyretinal-protein interactions mediating vision have remained largely unexplored. In the present study, A(3)- and A(4)-retinals are theoretically incorporated into squid and bovine visual pigments by use of the hybrid quantum mechanics/molecular mechanics [SORCI+Q//B3LYP/6-31G(d):Amber96] method, and insights into structure, enantioselectivity, and spectroscopy are gathered and presented for the first time. Contrary to general perception, our findings rule out the formation of a hydrogen bond between the hydroxyl-bearing β-ionone ring portion of retinal and opsin. Compared to A(1)-pigments, A(3)- and A(4)-pigments exhibit slightly blue-shifted absorption maxima due to increase in bond-length alternation of the hydroxyretinal. We suggest that (i) the binding site of firefly squid (Watasenia scintillans) opsin is very similar to that of the Japanese common squid (Todarodes pacificus) opsin; (ii) the molecular mechanism of spectral tuning in small white butterflies involve sites S116 and T185 and breaking of a hydrogen bond between sites E180 and T185; and finally (iii) A(3)-retinal may have occurred during the conversion of A(1)- to A(2)-retinal and insects may have acquired them, in order to absorb light in the blue-green wavelength region and to speed up the G-protein signaling cascade.
© 2011 American Chemical Society

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Year:  2011        PMID: 22087641      PMCID: PMC3249143          DOI: 10.1021/jp208107r

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  61 in total

1.  QM/MM study of energy storage and molecular rearrangements due to the primary event in vision.

Authors:  Jose A Gascon; Victor S Batista
Journal:  Biophys J       Date:  2004-08-31       Impact factor: 4.033

2.  S1 and S2 excited States of gas-phase Schiff-base retinal chromophores.

Authors:  I B Nielsen; L Lammich; L H Andersen
Journal:  Phys Rev Lett       Date:  2006-01-04       Impact factor: 9.161

3.  Effects of modified chromophores on the spectral sensitivity of salamander, squirrel and macaque cones.

Authors:  C L Makino; T W Kraft; R A Mathies; J Lugtenburg; M E Miley; R van der Steen; D A Baylor
Journal:  J Physiol       Date:  1990-05       Impact factor: 5.182

4.  Spectral tuning of deep red cone pigments.

Authors:  Tabitha L Amora; Lavoisier S Ramos; Jhenny F Galan; Robert R Birge
Journal:  Biochemistry       Date:  2008-03-28       Impact factor: 3.162

5.  Resonance Raman examination of the wavelength regulation mechanism in human visual pigments.

Authors:  G G Kochendoerfer; Z Wang; D D Oprian; R A Mathies
Journal:  Biochemistry       Date:  1997-06-03       Impact factor: 3.162

6.  Competition between retinal and 3-dehydroretinal for opsin in the regeneration of visual pigment.

Authors:  T Suzuki; M Makino-Tasaka; S Miyata
Journal:  Vision Res       Date:  1985       Impact factor: 1.886

7.  Absorption of schiff-base retinal chromophores in vacuo.

Authors:  Lars H Andersen; Iben B Nielsen; Michael B Kristensen; Mohamed O A El Ghazaly; Stefan Haacke; Mogens Brøndsted Nielsen; Michael Axman Petersen
Journal:  J Am Chem Soc       Date:  2005-09-07       Impact factor: 15.419

8.  Analogue pigment studies of chromophore-protein interactions in metarhodopsins.

Authors:  G Renk; R K Crouch
Journal:  Biochemistry       Date:  1989-01-24       Impact factor: 3.162

9.  Determinants of visual pigment absorbance: identification of the retinylidene Schiff's base counterion in bovine rhodopsin.

Authors:  J Nathans
Journal:  Biochemistry       Date:  1990-10-16       Impact factor: 3.162

10.  CNDOL: A fast and reliable method for the calculation of electronic properties of very large systems. Applications to retinal binding pocket in rhodopsin and gas phase porphine.

Authors:  Luis Alberto Montero-Cabrera; Ute Röhrig; Juan A Padrón-Garcia; Rachel Crespo-Otero; Ana L Montero-Alejo; José M Garcia de la Vega; Majed Chergui; Ursula Rothlisberger
Journal:  J Chem Phys       Date:  2007-10-14       Impact factor: 3.488

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  3 in total

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Authors:  Willem J de Grip; Srividya Ganapathy
Journal:  Front Chem       Date:  2022-06-22       Impact factor: 5.545

Review 2.  Adaptive Landscapes in the Age of Synthetic Biology.

Authors:  Xiao Yi; Antony M Dean
Journal:  Mol Biol Evol       Date:  2019-05-01       Impact factor: 16.240

3.  Expression of a homologue of a vertebrate non-visual opsin Opn3 in the insect photoreceptors.

Authors:  Mitsumasa Koyanagi; Hayato Honda; Hirohisa Yokono; Ryu Sato; Takashi Nagata; Akihisa Terakita
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2022-09-05       Impact factor: 6.671

  3 in total

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