Literature DB >> 19287003

A structural model for the damage-sensing complex in bacterial nucleotide excision repair.

Danaya Pakotiprapha1, Yi Liu, Gregory L Verdine, David Jeruzalmi.   

Abstract

Nucleotide excision repair is distinguished from other DNA repair pathways by its ability to process a wide range of structurally unrelated DNA lesions. In bacteria, damage recognition is achieved by the UvrA.UvrB ensemble. Here, we report the structure of the complex between the interaction domains of UvrA and UvrB. These domains are necessary and sufficient for full-length UvrA and UvrB to associate and thereby form the DNA damage-sensing complex of bacterial nucleotide excision repair. The crystal structure and accompanying biochemical analyses suggest a model for the complete damage-sensing complex.

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Year:  2009        PMID: 19287003      PMCID: PMC2676014          DOI: 10.1074/jbc.M900571200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  33 in total

1.  Catalytic sites for 3' and 5' incision of Escherichia coli nucleotide excision repair are both located in UvrC.

Authors:  E E Verhoeven; M van Kesteren; G F Moolenaar; R Visse; N Goosen
Journal:  J Biol Chem       Date:  2000-02-18       Impact factor: 5.157

2.  ARP/wARP and molecular replacement.

Authors:  A Perrakis; M Harkiolaki; K S Wilson; V S Lamzin
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-09-21

3.  The Protein Data Bank.

Authors:  Helen M Berman; Tammy Battistuz; T N Bhat; Wolfgang F Bluhm; Philip E Bourne; Kyle Burkhardt; Zukang Feng; Gary L Gilliland; Lisa Iype; Shri Jain; Phoebe Fagan; Jessica Marvin; David Padilla; Veerasamy Ravichandran; Bohdan Schneider; Narmada Thanki; Helge Weissig; John D Westbrook; Christine Zardecki
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-05-29

4.  The isomerization of the UvrB-DNA preincision complex couples the UvrB and UvrC activities.

Authors:  Emmanuelle Delagoutte; Robert P P Fuchs; Elisabeth Bertrand-Burggraf
Journal:  J Mol Biol       Date:  2002-06-28       Impact factor: 5.469

5.  Active site of (A)BC excinuclease. II. Binding, bending, and catalysis mutants of UvrB reveal a direct role in 3' and an indirect role in 5' incision.

Authors:  J J Lin; A M Phillips; J E Hearst; A Sancar
Journal:  J Biol Chem       Date:  1992-09-05       Impact factor: 5.157

6.  The presence of two UvrB subunits in the UvrAB complex ensures damage detection in both DNA strands.

Authors:  Esther E A Verhoeven; Claire Wyman; Geri F Moolenaar; Nora Goosen
Journal:  EMBO J       Date:  2002-08-01       Impact factor: 11.598

7.  The role of ATP binding and hydrolysis by UvrB during nucleotide excision repair.

Authors:  G F Moolenaar; M F Herron; V Monaco; G A van der Marel; J H van Boom; R Visse; N Goosen
Journal:  J Biol Chem       Date:  2000-03-17       Impact factor: 5.157

8.  Interactions between UvrA and UvrB: the role of UvrB's domain 2 in nucleotide excision repair.

Authors:  James J Truglio; Deborah L Croteau; Milan Skorvaga; Matthew J DellaVecchia; Karsten Theis; Bhaskar S Mandavilli; Bennett Van Houten; Caroline Kisker
Journal:  EMBO J       Date:  2004-06-10       Impact factor: 11.598

9.  Refinement of macromolecular structures by the maximum-likelihood method.

Authors:  G N Murshudov; A A Vagin; E J Dodson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1997-05-01

10.  Active site of (A)BC excinuclease. I. Evidence for 5' incision by UvrC through a catalytic site involving Asp399, Asp438, Asp466, and His538 residues.

Authors:  J J Lin; A Sancar
Journal:  J Biol Chem       Date:  1992-09-05       Impact factor: 5.157

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  30 in total

1.  Structure and mechanism of the UvrA-UvrB DNA damage sensor.

Authors:  Danaya Pakotiprapha; Martin Samuels; Koning Shen; Johnny H Hu; David Jeruzalmi
Journal:  Nat Struct Mol Biol       Date:  2012-02-05       Impact factor: 15.369

2.  Nucleotide excision repair (NER) machinery recruitment by the transcription-repair coupling factor involves unmasking of a conserved intramolecular interface.

Authors:  Alexandra M Deaconescu; Anastasia Sevostyanova; Irina Artsimovitch; Nikolaus Grigorieff
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-13       Impact factor: 11.205

Review 3.  Alkyltransferase-like proteins: molecular switches between DNA repair pathways.

Authors:  Julie L Tubbs; John A Tainer
Journal:  Cell Mol Life Sci       Date:  2010-05-26       Impact factor: 9.261

4.  Correlation of Thermal Stability and Structural Distortion of DNA Interstrand Cross-Links Produced from Oxidized Abasic Sites with Their Selective Formation and Repair.

Authors:  Souradyuti Ghosh; Marc M Greenberg
Journal:  Biochemistry       Date:  2015-10-01       Impact factor: 3.162

Review 5.  RNA polymerase between lesion bypass and DNA repair.

Authors:  Alexandra M Deaconescu
Journal:  Cell Mol Life Sci       Date:  2013-06-27       Impact factor: 9.261

6.  Derepression of bacterial transcription-repair coupling factor is associated with a profound conformational change.

Authors:  Devendra B Srivastava; Seth A Darst
Journal:  J Mol Biol       Date:  2010-12-23       Impact factor: 5.469

7.  Prioritizing the repair of DNA damage that is encountered by RNA polymerase.

Authors:  Nigel Savery
Journal:  Transcription       Date:  2011-07

Review 8.  Surviving the sun: repair and bypass of DNA UV lesions.

Authors:  Wei Yang
Journal:  Protein Sci       Date:  2011-11       Impact factor: 6.725

9.  Nucleotide excision repair of a DNA interstrand cross-link produces single- and double-strand breaks.

Authors:  Xiaohua Peng; Avik K Ghosh; Bennett Van Houten; Marc M Greenberg
Journal:  Biochemistry       Date:  2010-01-12       Impact factor: 3.162

10.  Enthalpy-entropy contribution to carcinogen-induced DNA conformational heterogeneity.

Authors:  Fengting Liang; Bongsup P Cho
Journal:  Biochemistry       Date:  2010-01-19       Impact factor: 3.162

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