Literature DB >> 19285569

Practical experience with the maintenance and auditing of a large medical ontology.

David Baorto1, Li Li, James J Cimino.   

Abstract

The Medical Entities Dictionary (MED) has served as a unified terminology at New York Presbyterian Hospital and Columbia University for more than 20 years. It was initially created to allow the clinical data from the disparate information systems (e.g., radiology, pharmacy, and multiple laboratories, etc.) to be uniquely codified for storage in a single data repository, and functions as a real time terminology server for clinical applications and decision support tools. Being conceived as a knowledge base, the MED incorporates relationships among local terms, between local terms and external standards, and additional knowledge about terms in a semantic network structure. Over the past two decades, we have sought to develop methods to maintain, audit and improve the content of the MED, such that it remains true to its original design goals. This has resulted in a complex, multi-faceted process, with both manual and automated components. In this paper, we describe this process, with examples of its effectiveness. We believe that our process provides lessons for others who seek to maintain complex, concept-oriented controlled terminologies.

Entities:  

Mesh:

Year:  2009        PMID: 19285569      PMCID: PMC3508433          DOI: 10.1016/j.jbi.2009.03.005

Source DB:  PubMed          Journal:  J Biomed Inform        ISSN: 1532-0464            Impact factor:   6.317


  18 in total

Review 1.  Integration and beyond: linking information from disparate sources and into workflow.

Authors:  W W Stead; R A Miller; M A Musen; W R Hersh
Journal:  J Am Med Inform Assoc       Date:  2000 Mar-Apr       Impact factor: 4.497

2.  Quality assurance through automated monitoring and concurrent feedback using a computer-based medical information system.

Authors:  G O Barnett; R Winickoff; J L Dorsey; M M Morgan; R S Lurie
Journal:  Med Care       Date:  1978-11       Impact factor: 2.983

Review 3.  The practical impact of ontologies on biomedical informatics.

Authors:  J J Cimino; X Zhu
Journal:  Yearb Med Inform       Date:  2006

4.  The Columbia-Presbyterian Medical Center decision-support system as a model for implementing the Arden Syntax.

Authors:  G Hripcsak; J J Cimino; S B Johnson; P D Clayton
Journal:  Proc Annu Symp Comput Appl Med Care       Date:  1991

5.  Portability issues for a structured clinical vocabulary: mapping from Yale to the Columbia medical entities dictionary.

Authors:  J L Kannry; L Wright; M Shifman; S Silverstein; P L Miller
Journal:  J Am Med Inform Assoc       Date:  1996 Jan-Feb       Impact factor: 4.497

6.  Knowledge-based approaches to the maintenance of a large controlled medical terminology.

Authors:  J J Cimino; P D Clayton; G Hripcsak; S B Johnson
Journal:  J Am Med Inform Assoc       Date:  1994 Jan-Feb       Impact factor: 4.497

7.  The Unified Medical Language System.

Authors:  D A Lindberg; B L Humphreys; A T McCray
Journal:  Methods Inf Med       Date:  1993-08       Impact factor: 2.176

8.  Managing vocabulary for a centralized clinical system.

Authors:  J J Cimino; S B Johnson; G Hripcsak; C L Hill; P D Clayton
Journal:  Medinfo       Date:  1995

9.  Designing a controlled medical vocabulary server: the VOSER project.

Authors:  R A Rocha; S M Huff; P J Haug; H R Warner
Journal:  Comput Biomed Res       Date:  1994-12

10.  The HELP system.

Authors:  T A Pryor; R M Gardner; P D Clayton; H R Warner
Journal:  J Med Syst       Date:  1983-04       Impact factor: 4.460

View more
  18 in total

Review 1.  A review of auditing methods applied to the content of controlled biomedical terminologies.

Authors:  Xinxin Zhu; Jung-Wei Fan; David M Baorto; Chunhua Weng; James J Cimino
Journal:  J Biomed Inform       Date:  2009-03-12       Impact factor: 6.317

2.  Development and evaluation of an ontology for guiding appropriate antibiotic prescribing.

Authors:  Tiffani J Bright; E Yoko Furuya; Gilad J Kuperman; James J Cimino; Suzanne Bakken
Journal:  J Biomed Inform       Date:  2011-10-11       Impact factor: 6.317

3.  Managing Medical Vocabulary Updates in a Clinical Data Warehouse: An RxNorm Case Study.

Authors:  Tanya Podchiyska; Penni Hernandez; Todd Ferris; Susan Weber; Henry J Lowe
Journal:  AMIA Annu Symp Proc       Date:  2010-11-13

4.  Leveraging Terminology Services for Extract-Transform-Load Processes: A User-Centered Approach.

Authors:  Kevin J Peterson; Guoqian Jiang; Scott M Brue; Hongfang Liu
Journal:  AMIA Annu Symp Proc       Date:  2017-02-10

5.  Workflow Lexicons in Healthcare: Validation of the SWIM Lexicon.

Authors:  Chris Meenan; Bradley Erickson; Nancy Knight; Jewel Fossett; Elizabeth Olsen; Prerna Mohod; Joseph Chen; Steve G Langer
Journal:  J Digit Imaging       Date:  2017-06       Impact factor: 4.056

6.  A classification of errors in lay comprehension of medical documents.

Authors:  Alla Keselman; Catherine Arnott Smith
Journal:  J Biomed Inform       Date:  2012-08-20       Impact factor: 6.317

7.  Desiderata for healthcare integrated data repositories based on architectural comparison of three public repositories.

Authors:  Vojtech Huser; James J Cimino
Journal:  AMIA Annu Symp Proc       Date:  2013-11-16

8.  Utilizing a structural meta-ontology for family-based quality assurance of the BioPortal ontologies.

Authors:  Christopher Ochs; Zhe He; Ling Zheng; James Geller; Yehoshua Perl; George Hripcsak; Mark A Musen
Journal:  J Biomed Inform       Date:  2016-03-14       Impact factor: 6.317

9.  Design, Development, and Initial Evaluation of a Terminology for Clinical Decision Support and Electronic Clinical Quality Measurement.

Authors:  Yanhua Lin; Catherine J Staes; David E Shields; Vijay Kandula; Brandon M Welch; Kensaku Kawamoto
Journal:  AMIA Annu Symp Proc       Date:  2015-11-05

Review 10.  Representing ontogeny through ontology: a developmental biologist's guide to the gene ontology.

Authors:  David P Hill; Tanya Z Berardini; Douglas G Howe; Kimberly M Van Auken
Journal:  Mol Reprod Dev       Date:  2010-04       Impact factor: 2.609

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.