Literature DB >> 19278646

Functional divergence in the growing family of RNA polymerases.

Robert Landick.   

Abstract

In plants, unorthodox multisubunit RNA polymerases (RNAPs) play key roles in small interfering RNA (siRNA) genesis and function. In a recent issue of Molecular Cell, Ream et al. (2009) established a 12-subunit composition for Arabidopsis RNAPIV and RNAPV. Subunit and sequence divergence between RNAPIV-V and RNAPI-III suggests significant functional deviation of these intriguing RNAPs.

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Year:  2009        PMID： 19278646      PMCID： PMC3679663          DOI： 10.1016/j.str.2009.02.006

Source DB:  PubMed          Journal:  Structure        ISSN： 0969-2126            Impact factor:   5.006


  11 in total

1.  Structures of complete RNA polymerase II and its subcomplex, Rpb4/7.

Authors:  Karim-Jean Armache; Simone Mitterweger; Anton Meinhart; Patrick Cramer
Journal:  J Biol Chem       Date:  2004-12-09       Impact factor: 5.157

2.  A multistep process gave rise to RNA polymerase IV of land plants.

Authors:  Jie Luo; Benjamin D Hall
Journal:  J Mol Evol       Date:  2006-12-09       Impact factor: 2.395

3.  Structural basis for substrate loading in bacterial RNA polymerase.

Authors:  Dmitry G Vassylyev; Marina N Vassylyeva; Jinwei Zhang; Murali Palangat; Irina Artsimovitch; Robert Landick
Journal:  Nature       Date:  2007-06-20       Impact factor: 49.962

4.  An atypical RNA polymerase involved in RNA silencing shares small subunits with RNA polymerase II.

Authors:  Linfeng Huang; Alexandra M E Jones; Iain Searle; Kanu Patel; Hannes Vogler; Nina C Hubner; David C Baulcombe
Journal:  Nat Struct Mol Biol       Date:  2008-12-14       Impact factor: 15.369

5.  A stepwise pathway for biogenesis of 24-nt secondary siRNAs and spreading of DNA methylation.

Authors:  Lucia Daxinger; Tatsuo Kanno; Etienne Bucher; Johannes van der Winden; Ulf Naumann; Antonius J M Matzke; Marjori Matzke
Journal:  EMBO J       Date:  2008-12-11       Impact factor: 11.598

6.  Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis.

Authors:  Dong Wang; David A Bushnell; Kenneth D Westover; Craig D Kaplan; Roger D Kornberg
Journal:  Cell       Date:  2006-12-01       Impact factor: 41.582

7.  PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis.

Authors:  Rebecca A Mosher; Frank Schwach; David Studholme; David C Baulcombe
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-19       Impact factor: 11.205

8.  Unified two-metal mechanism of RNA synthesis and degradation by RNA polymerase.

Authors:  Vasily Sosunov; Ekaterina Sosunova; Arkady Mustaev; Irina Bass; Vadim Nikiforov; Alex Goldfarb
Journal:  EMBO J       Date:  2003-05-01       Impact factor: 11.598

9.  Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes.

Authors:  Andrzej T Wierzbicki; Jeremy R Haag; Craig S Pikaard
Journal:  Cell       Date:  2008-11-14       Impact factor: 41.582

10.  Metal A and metal B sites of nuclear RNA polymerases Pol IV and Pol V are required for siRNA-dependent DNA methylation and gene silencing.

Authors:  Jeremy R Haag; Olga Pontes; Craig S Pikaard
Journal:  PLoS One       Date:  2009-01-01       Impact factor: 3.240
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  11 in total

Review 1.  Evolution of multisubunit RNA polymerases in the three domains of life.

Authors:  Finn Werner; Dina Grohmann
Journal:  Nat Rev Microbiol       Date:  2011-02       Impact factor: 60.633

Review 2.  RNA-directed DNA methylation: an epigenetic pathway of increasing complexity.

Authors:  Marjori A Matzke; Rebecca A Mosher
Journal:  Nat Rev Genet       Date:  2014-05-08       Impact factor: 53.242

3.  In vitro transcription activities of Pol IV, Pol V, and RDR2 reveal coupling of Pol IV and RDR2 for dsRNA synthesis in plant RNA silencing.

Authors:  Jeremy R Haag; Thomas S Ream; Michelle Marasco; Carrie D Nicora; Angela D Norbeck; Ljiljana Pasa-Tolic; Craig S Pikaard
Journal:  Mol Cell       Date:  2012-11-08       Impact factor: 17.970

4.  Reaction Mechanisms of Pol IV, RDR2, and DCL3 Drive RNA Channeling in the siRNA-Directed DNA Methylation Pathway.

Authors:  Jasleen Singh; Vibhor Mishra; Feng Wang; Hsiao-Yun Huang; Craig S Pikaard
Journal:  Mol Cell       Date:  2019-08-08       Impact factor: 17.970

5.  Conserved Trigger Loop Histidine of RNA Polymerase II Functions as a Positional Catalyst Primarily through Steric Effects.

Authors:  Michael Z Palo; Junqiao Zhu; Tatiana V Mishanina; Robert Landick
Journal:  Biochemistry       Date:  2021-10-27       Impact factor: 3.321

Review 6.  Basic mechanism of transcription by RNA polymerase II.

Authors:  Vladimir Svetlov; Evgeny Nudler
Journal:  Biochim Biophys Acta       Date:  2012-09-06

7.  Catalytic properties of RNA polymerases IV and V: accuracy, nucleotide incorporation and rNTP/dNTP discrimination.

Authors:  Michelle Marasco; Weiyi Li; Michael Lynch; Craig S Pikaard
Journal:  Nucleic Acids Res       Date:  2017-11-02       Impact factor: 16.971

Review 8.  RNA Pol IV and V in gene silencing: Rebel polymerases evolving away from Pol II's rules.

Authors:  Ming Zhou; Julie A Law
Journal:  Curr Opin Plant Biol       Date:  2015-09-05       Impact factor: 7.834

Review 9.  Fidelity in archaeal information processing.

Authors:  Bart de Koning; Fabian Blombach; Stan J J Brouns; John van der Oost
Journal:  Archaea       Date:  2010-09-05       Impact factor: 3.273

10.  Identification of an ortholog of the eukaryotic RNA polymerase III subunit RPC34 in Crenarchaeota and Thaumarchaeota suggests specialization of RNA polymerases for coding and non-coding RNAs in Archaea.

Authors:  Fabian Blombach; Kira S Makarova; Jeannette Marrero; Bettina Siebers; Eugene V Koonin; John van der Oost
Journal:  Biol Direct       Date:  2009-10-14       Impact factor: 4.540
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